PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759594
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 300aa    MW: 34424.9 Da    PI: 9.8865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759594genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1460105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed  l ++v+ +G+ +W+ Ia++m  gRt+k+c++rw++ 
        676759594  60 RGHWRISEDSELMELVAVYGPQNWNHIAEKMH-GRTGKSCRLRWFNQ 105
                      789999**************************.***********996 PP
2Myb_DNA-binding482.8e-15113156247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
        676759594 113 RAFSVEEEETLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 156
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.06755106IPR017930Myb domain
SMARTSM007171.6E-1059108IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-2760153IPR009057Homeodomain-like
PfamPF002495.4E-1460105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2461113IPR009057Homeodomain-like
CDDcd001679.52E-1063104No hitNo description
PROSITE profilePS5129424.662107161IPR017930Myb domain
SMARTSM007174.0E-13111159IPR001005SANT/Myb domain
PfamPF002494.9E-12113156IPR001005SANT/Myb domain
CDDcd001674.36E-9114157No hitNo description
Gene3DG3DSA:1.10.10.608.8E-20114161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDFSCFKEYP FDLRCRGACN GFGENNAVEF SNKTRMLKES DEMKKKKKKK KQRGSKVCSR  60
GHWRISEDSE LMELVAVYGP QNWNHIAEKM HGRTGKSCRL RWFNQLDPKI NKRAFSVEEE  120
ETLLAAHRAF GNKWAMIAKL FNGRTDNALK NHWHVLMARK LRQQSTSYVR RFNGSSHEPT  180
ADHRSFNIPP DSEDMNLEKY SWKLLKEGTT NLKAQYLQGE YCSSRMPMQA PHYSTFSADS  240
LALTLHVSIQ EPSSSSSSSS SSLSLPSSSA EHKMVTRYFE TTKPPAFIDF LGVGHQSYNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-30601614105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676759594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395314.11e-170transcription factor MYB117
TrEMBLV4K4Z81e-169V4K4Z8_EUTSA; Uncharacterized protein
STRINGXP_006395314.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-154myb domain protein 110