PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676759574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 193aa MW: 20736.2 Da PI: 8.0225 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 111.6 | 3.9e-35 | 43 | 99 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ 676759574 43 ITYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 99 79*****************************99********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.8E-29 | 43 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-31 | 44 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-17 | 45 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.717 | 45 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDMTPKSPEP ESETPTRIQP AKPISFSNGI IKRHHIHHHP ISITYKECLK NHAAAIGGHA 60 LDGCGEFMPS PSSTPSDPTS LKCAACGCHR NFHRRDPDDT SLNSAVPPPS LPPSSTTAAI 120 EYQPHHRHHP PPPVPPLPRS PNSSSPPPIS SSYMLLALSG NNKTGGNNLP FSDLNFAANN 180 LSGHHHHTPG KEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676759574 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189594 | 0.0 | AC189594.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013N10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478108.1 | 2e-80 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LHF0 | 2e-67 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1J3G0A2 | 1e-89 | A0A1J3G0A2_NOCCA; Zinc-finger homeodomain protein 9 | ||||
STRING | A0A087GV62 | 2e-79 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-42 | homeobox protein 34 |
Publications ? help Back to Top | |||
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