PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759128
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CPP
Protein Properties Length: 489aa    MW: 52622.8 Da    PI: 6.6066
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.4e-145896241
        TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
               +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e
  676759128 58 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCINNVE 96
               689*************************.********987 PP
2TCR512.8e-16142181140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC +CkN e
  676759128 142 KHHKGCHCKKSGCLKKYCECFQANILCSDNCKCLGCKNFE 181
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-155797IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.4958182IPR005172CRC domain
PfamPF036389.7E-115994IPR005172CRC domain
SMARTSM011146.6E-20142183IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.8E-13145180IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGEGDEFPPE KKSARQLDFD VEPPTSVSSP LVTQGPIRNP ESPKSTPRPG GVDGTPLKKK  60
HCNCKHSRCL KLYCECFASG TYCDGCNCLN CINNVENEPA RRDAVESTLE RNPNAFRPKI  120
ASTPHDARDN GEVVGGVVML GKHHKGCHCK KSGCLKKYCE CFQANILCSD NCKCLGCKNF  180
EGSEDRQALF HGEHSHNAAF LQHANAAITG AIGSSGFASS PAPKRKKAQD IFFAQDSFTH  240
RLGQGNNGTM TTSKPVPRRG GNTSLGPSKV VYRSLLADII QPHDVKALCS VLVAVSEEAA  300
KKSTEKRLED LTETSLASSA QDQGQEYNNG TEVEKAASGN EADISGAEES NSDGSKGKSL  360
SPETLALMCD EQDTMLMVAA SSNCSVEPSS QLPNGQDQAY AEQEKIVLTK FRDCLNRIIS  420
YGELKESNCS LARMDVESPV HAAVKTEPVV QQGAVTNGVS QTTIQQPSQL TSSHTQIQQP  480
QALSEKKDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-305919111132Protein lin-54 homolog
5fd3_B1e-305919111132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676759128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408925.10.0protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A1J3GTG60.0A0A1J3GTG6_NOCCA; Protein tesmin/TSO1-like CXC 6
STRINGXP_006408925.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein