PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759030
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 519aa    MW: 56624.7 Da    PI: 6.1059
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759030genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31279337259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  676759030 279 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 337
                8*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-34263339IPR003657WRKY domain
SuperFamilySSF1182902.88E-28271339IPR003657WRKY domain
PROSITE profilePS5081129.838273339IPR003657WRKY domain
SMARTSM007743.6E-38278338IPR003657WRKY domain
PfamPF031065.6E-27279337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MFRFPVSLGG PGDNLKQTQP SDEQHHRAVM DEVDFFRSEK RDDQNIITEE THRLHVKREN  60
SRVDDDDDRS TGINTGLNLL TANTGSDESL VDDGLSVDME EKRTKCENAQ LREELKKSNE  120
ENQRLKGMLS QTTNNFNSLQ MQLVAVMRQQ EDHHHLATTE SNDKTTNKRH EAPEMVPRQF  180
IDLGLPSAEV SSDERTTVLS GSPPSLLEDS SSRPRGKRIL EIEETPATDN GWENPSKVAK  240
HNASSINANG NAIDQSAAEA TMRKARVSVR ARSEAPMLND GCQWRKYGQK MAKGNPCPRA  300
YYRCTMAVGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TMSNQDGLMN PTNLFARTML PCSSSMATIS ASAPFPTITL DLTESASNGN SPTNNNPLMQ  420
FSQRSGLAEL NQSGLPQMMG QALYYNQQQS KFSGLQIPSQ SLNAGESVSA ATAAIAANPN  480
FAAALAAAIT SIINGSNNHQ NGNSNSSTNN VTTSSVDRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23265341176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676759030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114575.10.0PREDICTED: LOW QUALITY PROTEIN: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A397Y3W20.0A0A397Y3W2_BRACM; Uncharacterized protein
STRINGBo9g078130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein