PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758752
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 404aa    MW: 46492.4 Da    PI: 4.704
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758752genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35611532103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws+++nsfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k ll++i+
     676758752  61 FLTKTYDLVEDSRTNHVVSWSQTNNSFVVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKYLLKTIR 148
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     676758752 149 RRKTS 153
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.63E-3556150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5957150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-196184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-19112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFNDSP SPPPSSTSSY LYSTSMAPND PTTSSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQTNNSFVVW DPQAFSTTLL PRFFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KYLLKTIRRR KTSNNNQMQP PQSSSQQQSL DNCCIEVGRY  180
GLDGEMDSLR RDKQVLMMEL VKLRQQQQNT KMYLTLIEEK LKKTESKQQQ MMSFLARAMQ  240
NPDFLQQLIE QKEKRKEMEE AISKKRQRPI DQGTRNVVNV EDDDNSGAGG AYGRYGNDAG  300
SSAFVGVKHE TYGDMSDFQI SELDRLAMHI QGLGDQFTRE EVLDVEKRDE EGEQEGYQKE  360
HKEIYGEGFW EDMLNEGQNF DFEGDEENVD VLIEQLGYLG SSSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676758752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489151.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A397ZHV50.0A0A397ZHV5_BRACM; Uncharacterized protein
STRINGBo5g093470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B