PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676758678

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NF-YA

Protein Properties

Length: 292aa MW: 31847.8 Da PI: 9.9977

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676758678	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.6	1.1e-29	137	196	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRgsgGrF 676758678 137 GTIYVNSKQYHGIIRRRQSRAKAAAvldQNKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 196 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.0E-31	134	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.677	135	199	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-21	138	160	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-24	138	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-21	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAMQTVRESL LSAPQISWWN AFGSQPLAPV SPAGDSNSFA GVKVGSVGDQ TEHGVDKQSN 60 SASHFAFSHG DVKSSRVVPK PHGAAFSMQP PCLELGFSQP QIYTKYPCVE QQYYGVVSAY 120 GSQSRVMLPL NMETEDGTIY VNSKQYHGII RRRQSRAKAA AVLDQNKLSS RCRKPYMHHS 180 RHLHALRRPR GSGGRFLNTK SQNLEKSGTN AKKADGNKQT QPQPQQSNSQ NSEVLHPESG 240 TMNLSNGLNV SGSEVTSMNY FLSSSVHPLG GMVMPSKWIA AAMDNGCCNF KT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	1e-15	136	197	2	60	HAPB protein
4g92_A	1e-15	136	197	2	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676758678

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	0.0	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187220.1	0.0	nuclear factor Y, subunit A2
Swissprot	Q9M9X4	0.0	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A178VK23	0.0	A0A178VK23_ARATH; UNE8
STRING	AT3G05690.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-180	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]