PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676758502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 659aa MW: 72835.3 Da PI: 6.4325 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.5 | 1.5e-24 | 181 | 237 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e++++ ++++e++ +g+H he 676758502 181 RDGYNWRKYGQKQVKSPKGSRSYYRCTYSDCCAKK-IECTNDSGNMIEVVKKGSHSHE 237 6********************************98.*********************8 PP | |||||||
2 | WRKY | 99.6 | 2e-31 | 343 | 399 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ae++ +++itY+g Hnh+ 676758502 343 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAAENTAAIIITYKGVHNHD 399 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-20 | 177 | 239 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-19 | 178 | 239 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-21 | 180 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.788 | 182 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-17 | 182 | 236 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 326 | 401 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.351 | 336 | 401 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-27 | 337 | 401 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-36 | 341 | 400 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-24 | 343 | 399 | IPR003657 | WRKY domain |
Hamap | MF_01363 | 22.148 | 529 | 632 | IPR001787 | Ribosomal protein L21 |
Pfam | PF00829 | 1.4E-32 | 530 | 630 | IPR028909 | Ribosomal protein L21-like |
TIGRFAMs | TIGR00061 | 7.6E-26 | 530 | 631 | IPR001787 | Ribosomal protein L21 |
SuperFamily | SSF141091 | 5.36E-31 | 530 | 630 | IPR028909 | Ribosomal protein L21-like |
PROSITE pattern | PS01169 | 0 | 601 | 623 | IPR018258 | Ribosomal protein L21, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MDDKASDEAD VYAVENRTSE ADKCEKVEPE KELCNGEDDG LSQLRDEESL KTTDADMEDL 60 HDEAVRETLA KDQVEGAREN SSVEPNGKDV SELKERASGK ESFSSAIVSV GEIAVDNREV 120 EKSIGLTASL NPSVVEPSLS SETSALHAVS LVSVPTKPEQ GSDSRVVSNL SVSPVLRTPP 180 RDGYNWRKYG QKQVKSPKGS RSYYRCTYSD CCAKKIECTN DSGNMIEVVK KGSHSHEPPQ 240 KNSFSPREIR AVSAISPGSE YNTVVKDLAI VPCDSAPSGS TKENICQALT IVEQKRSWEN 300 EAVEEPEPKR RQDNPQSSDS VSKPGKKHKF VVHAAGDVGI SGDGYRWRKY GQKMVKGNPN 360 PRNYYRCTSA GCPVRKHIET AAENTAAIII TYKGVHNHDM PVPKKRHGPP SSMLVAAAAP 420 TSMRKPSGAS ITRGTPISNR SLSRDFPWHR LCYRSQGRHF SSKTNGTDES SQGEEEDDDD 480 EEDYEDSAEM EVEREYSPAE KVEAAAEIGY KVMGPLKPSE RLFKHYEPVF AVVQIGSHQF 540 KVSNGDSIFT EKLKFCDIND KLILTKVLLL GSASQTIIGR PILPDATVHA VVEEHALDEK 600 VLIFKKKRRK NYRRTTGHRQ ELTKLRITDI QGIEKPEPTI VHKPSKAADT EQPKAELVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v61_BT | 2e-25 | 514 | 634 | 115 | 229 | Ribosomal Protein L21 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 604 | 608 | KKKRR |
2 | 604 | 609 | KKKRRK |
3 | 605 | 609 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676758502 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412655.1 | 0.0 | probable WRKY transcription factor 32 | ||||
Swissprot | P59583 | 0.0 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A1J3DQK8 | 0.0 | A0A1J3DQK8_NOCCA; Putative WRKY transcription factor 32 (Fragment) | ||||
STRING | Bostr.7867s0950.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6338 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 0.0 | WRKY DNA-binding protein 32 |