PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758350
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 300aa    MW: 34085.2 Da    PI: 4.9584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758350genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix415.2e-132191272
   trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
               Wt +  l L++    +e + +++ +  ++W  +s+++ +  ++r p+qC+ kw++l  +y +ik++e++r+
  676758350 21 WTLKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNALDVHRAPNQCRRKWDSLVSDYTQIKNWERGRS 91
               9999999999999*******************************************************973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-92195No hitNo description
PROSITE profilePS500906.472177IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEEGGSGSGS RRTRSQVAPD WTLKDCLILV NEIAAVEADC SNALSSFQKW TMISENCNAL  60
DVHRAPNQCR RKWDSLVSDY TQIKNWERGR SLSYWSLSID KRKKLNLPLN VENQLFEAIN  120
AVVMIQQNKA DTEPDTDSDP EAQDDFEVLD LTAELGSKRS RQRTMVVMKE NPPHKRKAEE  180
EPRRNRALRN IEEQRAKATN QKKTMEEKKP VEEISTDEEE EETMNKEEEV KAMEAKLGEK  240
ADLIHAIVGR NLAKGSETGG DIGIDGKMKF VRQQGEELIA CLSEIVGILN RFREAPHESQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676758350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412613.11e-165trihelix transcription factor ASR3
RefseqXP_024005449.11e-165trihelix transcription factor ASR3
RefseqXP_024005450.11e-165trihelix transcription factor ASR3
RefseqXP_024005452.11e-165trihelix transcription factor ASR3
RefseqXP_024005453.11e-165trihelix transcription factor ASR3
TrEMBLV4P3R91e-164V4P3R9_EUTSA; Uncharacterized protein
STRINGXP_006412613.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-116sequence-specific DNA binding transcription factors