PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676758308

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 737aa MW: 82855.1 Da PI: 7.8236

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676758308	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	467	518	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i++++l+k+F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ 676758308 467 AEKDITIDTLRKHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 518 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.86E-5	282	362	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.052	454	538	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-25	471	518	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.37E-20	638	730	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.5E-21	640	727	No hit	No description
SMART	SM00666	3.0E-24	643	728	IPR000270	PB1 domain
PROSITE profile	PS51745	24.628	643	728	IPR000270	PB1 domain
CDD	cd06407	2.17E-40	644	727	No hit	No description
Pfam	PF00564	3.4E-20	644	727	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MEESSNSGVV DFPDNFMDQL LWEECWEEEE EEQNQEASLW SSLGLKEKVT CAMGHLQEVM 60 GGETDLLIQL WVPLERGRRR VLSTEGQPYS LNPFSHSPSH LALYRAISAN YTFAAEAGSE 120 QLVGLPGRVF LRRMPEWTPD VRFFRSEEYY RIGYARRYQV RASLAIPLFQ GPSGNCLAVM 180 EMVTTHPSLE YASQIHTICH ALQAFDLRSS QTSIVPTSVK PHTDDLHLEV ASIVQGICSS 240 YRLPLAITWS HQQDLCLSSL VYACYAADQD SRSFLAACSY HHLLAGEGIA GTAFATKKQC 300 FATDVSILSK WSYPLSHYAR MFDLHAALAV PLLTRRDRTA QFVIEFFFPR ACLDTHTQRL 360 IQDCLASQLS LRFLSSPHLM VDNQHAKEVR DAPTALTEDH SSRSAEHLLA ENSSWISRMS 420 PEDKGKQVSV SWEYQRDELK LGAGVKEPNF SFSSSSSLEN RKRKTKAEKD ITIDTLRKHF 480 AGSLKDAAKN IGVCPTTLKR ICRQHGISRW PSRKIKKVGH SLRKLQVVMD SVEGVQGSVH 540 LASFYSSFPQ LQSSSSFPLL NPTQTVHMPP KSPPSSSGSQ SSSGSSTCCS SEEQQFGGFH 600 KPVLSHPQLL TQSSLQKEQR PVRVTSSLPP LPSATAQRKS NDGMKVKAMF GDSKTRMSLQ 660 PHWRLTDLRR ELVKRFGMDD VLKSNFSLKY LDDDQEWVLL TCDADLEECI QVYKSSVQKT 720 IRILVHQPLS SFPLILK

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MEESSNSGVV DFPDNFMDQL LWEECWEEEE EEQNQEASLW SSLGLKEKVT CAMGHLQEVM  60
GGETDLLIQL WVPLERGRRR VLSTEGQPYS LNPFSHSPSH LALYRAISAN YTFAAEAGSE  120
QLVGLPGRVF LRRMPEWTPD VRFFRSEEYY RIGYARRYQV RASLAIPLFQ GPSGNCLAVM  180
EMVTTHPSLE YASQIHTICH ALQAFDLRSS QTSIVPTSVK PHTDDLHLEV ASIVQGICSS  240
YRLPLAITWS HQQDLCLSSL VYACYAADQD SRSFLAACSY HHLLAGEGIA GTAFATKKQC  300
FATDVSILSK WSYPLSHYAR MFDLHAALAV PLLTRRDRTA QFVIEFFFPR ACLDTHTQRL  360
IQDCLASQLS LRFLSSPHLM VDNQHAKEVR DAPTALTEDH SSRSAEHLLA ENSSWISRMS  420
PEDKGKQVSV SWEYQRDELK LGAGVKEPNF SFSSSSSLEN RKRKTKAEKD ITIDTLRKHF  480
AGSLKDAAKN IGVCPTTLKR ICRQHGISRW PSRKIKKVGH SLRKLQVVMD SVEGVQGSVH  540
LASFYSSFPQ LQSSSSFPLL NPTQTVHMPP KSPPSSSGSQ SSSGSSTCCS SEEQQFGGFH  600
KPVLSHPQLL TQSSLQKEQR PVRVTSSLPP LPSATAQRKS NDGMKVKAMF GDSKTRMSLQ  660
PHWRLTDLRR ELVKRFGMDD VLKSNFSLKY LDDDQEWVLL TCDADLEECI QVYKSSVQKT  720
IRILVHQPLS SFPLILK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	338	LLTRRDRT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676758308

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411620.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	V4MK94	0.0	V4MK94_EUTSA; Uncharacterized protein
STRING	XP_006411620.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]