PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758252
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 269aa    MW: 29978.3 Da    PI: 8.4995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758252genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.4e-333891255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  676758252 38 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 91
               8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3353494IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-303491IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-233891IPR006447Myb domain, plants
SuperFamilySSF466891.15E-143890IPR009057Homeodomain-like
PfamPF002491.3E-83990IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGKCGGRNNG NGNYNNGVGF NGHGGGGGVR PYVRSPVPRL RWTPDLHRCF VNAVDMLGGQ  60
HRATPKLVLK MMDVKGLTIS HVKSHLQMYR GSKLTLGKPE ESSSSSIRRR QDTEEDYLHD  120
NLSLYSRNDC LLGFHSFPLS SHSSLRGGRR KEQTSESGDD DDEDFLHIMN MKKTKGTTTF  180
PSHHFHKKTE TEKNNSETTW QEQEQKQQED LSLSLSLNHH HWRSNGSSVS ETSEAVSTCS  240
APFVFKDCFG SSSPKIDLNL NLSISLLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-193993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-193993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-193993357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-193993357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676758252
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295111e-122AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBankBT0085561e-122BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBankBT0086991e-122BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBankKJ1389241e-122KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693582.11e-149putative Myb family transcription factor At1g14600
SwissprotQ700D95e-79MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLE5F7091e-147E5F709_9BRAS; Uncharacterized protein
STRINGBo2g134900.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.16e-68G2-like family protein