PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676757144

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 287aa MW: 31104.5 Da PI: 6.1869

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676757144	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.6e-34	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl 676757144 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.303	12	72	IPR017930	Myb domain
SuperFamily	SSF46689	6.45E-18	14	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-32	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEADNGGNNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ALGEPSGPVT GESDPATPAP TSESPLQDKS 180 GKECGPDKSL SVDESLSSYR EPLTPDSGCN IGSQDESTGE ERSSKKPRLM RGGAAGYTSE 240 MVVAHPILES GLNASYHQSD HSLDFDHTST SLLGAKNGLD KVSGDDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676757144

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084725	0.0	AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439742.1	0.0	PREDICTED: myb family transcription factor PHL7
Swissprot	Q9SJW0	0.0	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A398AK99	0.0	A0A398AK99_BRACM; Uncharacterized protein
TrEMBL	M4DCY1	0.0	M4DCY1_BRARP; Uncharacterized protein
STRING	Bra014348.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-167	G2-like family protein