PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676756758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Nin-like | ||||||||
Protein Properties | Length: 957aa MW: 105438 Da PI: 5.7692 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.9e-29 | 588 | 638 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ 676756758 588 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 638 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 1.52E-5 | 211 | 282 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.757 | 577 | 658 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.3E-26 | 590 | 638 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.52E-23 | 858 | 946 | No hit | No description |
PROSITE profile | PS51745 | 27.793 | 861 | 943 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.4E-28 | 861 | 943 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.1E-20 | 861 | 942 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.0E-27 | 861 | 943 | No hit | No description |
CDD | cd06407 | 4.16E-34 | 862 | 942 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 957 aa Download sequence Send to blast |
MCEPDDNTAR NGVAPPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSAN RMISPIFVSS 60 SSEQPCSPLW AFSDGAATNN HSGGDDEKIS SASALPSFRL SDYPLFLPYS APSVAENTAE 120 KHNGFQFPSP LMSLIPPENT DNYCVIKERM TQALRYFKES TEQHVLAQVW APVRKNGRDL 180 LTTLGQPFVL NPNGNGLNQY RMISLTYMFS VDSESDIELG LPGRVFRQKL PEWTPNVQYY 240 SSKEFSRLDH ALHYNVRGTL ALPVFNPSGD SCIGVVELIM TSEKIHYAPE VDRVCKALEA 300 VNLKSSEILD HQTTQICNES RQNALAEILE VLTNVCETHN LPLAQTWVPC QHGSVLANGG 360 GLKKNCTSFD GSCMGQVCMS TTDMACYVVD AHVWGFRDAC LEHHLQKGQG VAGRAFLNGG 420 SCFCRDITKF CKTQYPLVHY ALMFKLTTCF AISLQSSYTG NDSYILEFFL PSNITDDQEQ 480 DSLLGSLLVT MKEHFQSLRV ASGVDFGEDD DKLSFEIIRA LPDKKIHSEI ESIRVPFSGV 540 KSNATETLLI PQPAVQSSNP VNGKTNVATV NGVVKEKKKT EKKRGKTEKT ISLDVLQQYF 600 TGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGGLD 660 LTSMAVSSIP WTHGQTSAQP LNSPSGSKPP ELPTTNNSPN HWSTDHSPHE PNGSPELPSN 720 GHKRSRTADE SAGTPTSHGS CDGNQLDETK VPNQDPLFTV GGSPGLFFPP YTRDHDVSAA 780 SFSMPNRLLG TIDHFRGMPI EDAGSSKDLR NLCSTAAFDD KFPDSNWMNN DNNSNNNMYA 840 PPKEEAVANI TREPSGSEMR TITIKASYKE DIIRFRISSG SGIMELKDEV AKRLKLDAGT 900 FDIKYLDDDN EWVLIACDAD LQECLEIPRS SRTNIVRLLV HDVTSNLGSS CESTGEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676756758 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228452 | 0.0 | AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13. | |||
GenBank | BT005776 | 0.0 | BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413484.1 | 0.0 | protein NLP7 | ||||
Refseq | XP_024005488.1 | 0.0 | protein NLP7 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | V4MHY8 | 0.0 | V4MHY8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413484.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |