PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676756758
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Nin-like
Protein Properties Length: 957aa    MW: 105438 Da    PI: 5.7692
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676756758genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.94.9e-29588638252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  676756758 588 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 638
                799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557811.52E-5211282IPR029016GAF domain-like
PROSITE profilePS5151917.757577658IPR003035RWP-RK domain
PfamPF020427.3E-26590638IPR003035RWP-RK domain
SuperFamilySSF542772.52E-23858946No hitNo description
PROSITE profilePS5174527.793861943IPR000270PB1 domain
SMARTSM006662.4E-28861943IPR000270PB1 domain
PfamPF005643.1E-20861942IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.0E-27861943No hitNo description
CDDcd064074.16E-34862942No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MCEPDDNTAR NGVAPPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSAN RMISPIFVSS  60
SSEQPCSPLW AFSDGAATNN HSGGDDEKIS SASALPSFRL SDYPLFLPYS APSVAENTAE  120
KHNGFQFPSP LMSLIPPENT DNYCVIKERM TQALRYFKES TEQHVLAQVW APVRKNGRDL  180
LTTLGQPFVL NPNGNGLNQY RMISLTYMFS VDSESDIELG LPGRVFRQKL PEWTPNVQYY  240
SSKEFSRLDH ALHYNVRGTL ALPVFNPSGD SCIGVVELIM TSEKIHYAPE VDRVCKALEA  300
VNLKSSEILD HQTTQICNES RQNALAEILE VLTNVCETHN LPLAQTWVPC QHGSVLANGG  360
GLKKNCTSFD GSCMGQVCMS TTDMACYVVD AHVWGFRDAC LEHHLQKGQG VAGRAFLNGG  420
SCFCRDITKF CKTQYPLVHY ALMFKLTTCF AISLQSSYTG NDSYILEFFL PSNITDDQEQ  480
DSLLGSLLVT MKEHFQSLRV ASGVDFGEDD DKLSFEIIRA LPDKKIHSEI ESIRVPFSGV  540
KSNATETLLI PQPAVQSSNP VNGKTNVATV NGVVKEKKKT EKKRGKTEKT ISLDVLQQYF  600
TGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKIKKVNR SITKLKRVIE SVQGTDGGLD  660
LTSMAVSSIP WTHGQTSAQP LNSPSGSKPP ELPTTNNSPN HWSTDHSPHE PNGSPELPSN  720
GHKRSRTADE SAGTPTSHGS CDGNQLDETK VPNQDPLFTV GGSPGLFFPP YTRDHDVSAA  780
SFSMPNRLLG TIDHFRGMPI EDAGSSKDLR NLCSTAAFDD KFPDSNWMNN DNNSNNNMYA  840
PPKEEAVANI TREPSGSEMR TITIKASYKE DIIRFRISSG SGIMELKDEV AKRLKLDAGT  900
FDIKYLDDDN EWVLIACDAD LQECLEIPRS SRTNIVRLLV HDVTSNLGSS CESTGEL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676756758
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2284520.0AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBankBT0057760.0BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413484.10.0protein NLP7
RefseqXP_024005488.10.0protein NLP7
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLV4MHY80.0V4MHY8_EUTSA; Uncharacterized protein
STRINGXP_006413484.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]