PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676756148
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 446aa    MW: 50026.5 Da    PI: 6.6491
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676756148genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.31e-129424461374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaal................. 81 
                l++lL+++Ae+vs+++ ++aq+lL+ l  ++sp+gd+++Rl++ ft+AL+ r++r  +++ +++ +++++t+e++ss+++++                  
  676756148  42 LRRLLFTAAEFVSQSNVSAAQNLLSILYANSSPYGDSTERLVHLFTKALSVRINRqqQQDPTAENVATWTTNEMTSSTVFTSSvckeqflfrtknnnsdf 141
                689***************************************************965566799999999999999666666656999999*9*9999999 PP

       GRAS  82 .....klfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfA 169
                       +++++P+++fshltaNqaIl+a+e++    ++Hi+D+disqGlQWp+L+qaLa+R+    ++ppslRiTg+g+    + ++l++tgerL++fA
  676756148 142 dscyyLWLNQLTPFIRFSHLTANQAILDATETNsgnGALHILDLDISQGLQWPPLMQALAERSsnpsSPPPSLRITGCGR----DVTSLNRTGERLTRFA 237
                9876444************************9988899************************988877799*********....**************** PP

       GRAS 170 eelgvpfefnvl..vakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                ++lg++f+f++l  v+++l+ l  +++ L+++   gE++aVn+v+ l+r++++++++     ++L+++ksl+P++v+++e+ea+h+++sFl+rf+ea+++
  676756148 238 NSLGLQFQFHTLviVEEDLSGLllQIRLLALSGtqGETIAVNCVHFLYRFFNDDGDMIG---HFLSVIKSLNPRIVTMAEREANHGDPSFLNRFSEAVDH 334
                ***********975455665443466666655455**********************99...************************************** PP

       GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                y+a+fdslea+lp++s+er ++E++++g+ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklllr ++ s+gy+++  ++sl+lgW
  676756148 335 YVAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEAAERKQRHRRFEIWEEMMKRLGFVNVPVGSFAFSQAKLLLRLHYpSEGYNLQFLNNSLFLGW 434
                **************************************************************************************************** PP

       GRAS 363 kdrpLvsvSaWr 374
                ++r L+svS+W+
  676756148 435 QNRLLFSVSSWK 446
                ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.61516425IPR005202Transcription factor GRAS
PfamPF035143.5E-12742446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLASFKSSSS SSEDATAVTE NPPPPPFCLA SSSAATSAAH HLRRLLFTAA EFVSQSNVSA  60
AQNLLSILYA NSSPYGDSTE RLVHLFTKAL SVRINRQQQQ DPTAENVATW TTNEMTSSTV  120
FTSSVCKEQF LFRTKNNNSD FDSCYYLWLN QLTPFIRFSH LTANQAILDA TETNSGNGAL  180
HILDLDISQG LQWPPLMQAL AERSSNPSSP PPSLRITGCG RDVTSLNRTG ERLTRFANSL  240
GLQFQFHTLV IVEEDLSGLL LQIRLLALSG TQGETIAVNC VHFLYRFFND DGDMIGHFLS  300
VIKSLNPRIV TMAEREANHG DPSFLNRFSE AVDHYVAIFD SLEATLPPNS RERLTLEQRW  360
FGKEILDVVA AEAAERKQRH RRFEIWEEMM KRLGFVNVPV GSFAFSQAKL LLRLHYPSEG  420
YNLQFLNNSL FLGWQNRLLF SVSSWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-605044527378Protein SCARECROW
5b3h_A1e-605044526377Protein SCARECROW
5b3h_D1e-605044526377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676756148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646262.20.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1J3E1D60.0A0A1J3E1D6_NOCCA; Scarecrow-like protein 18
STRINGBostr.6758s0017.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]