PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755876
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 729aa    MW: 79546.7 Da    PI: 5.2647
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755876genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.38.1e-1163104142
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLter 42 
                +++ +++t+ q++eLe++F+++++p+ ++r+eL++ l+L+  
  676755876  63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPL 104
                688999*********************************975 PP
2START221.13.5e-692404591206
                HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                ela +a++elv++a+a++p+Wv+     e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tlev+s+g
  676755876 240 ELAVAAMEELVRMAQAGDPLWVSTDnsiEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsRALTLEVLSTG 338
                57899******************99999**************999********************************.********************** PP

                ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
      START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++p    + R +++pSg+li++++ng+skvtw+eh+++++r++h+++
  676755876 339 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGSWAVVDVSLDSLRPNP----ISRTRRRPSGCLIQELPNGYSKVTWIEHMEVDDRSVHAMY 434
                *******************************************************9....69999*********************************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                ++lv+sgla+gak+wv+tl+rqce+
  676755876 435 KPLVHSGLAFGAKRWVSTLERQCER 459
                ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-1444105IPR009057Homeodomain-like
SuperFamilySSF466891.33E-950107IPR009057Homeodomain-like
PROSITE profilePS500718.660107IPR001356Homeobox domain
SMARTSM003890.001261115IPR001356Homeobox domain
PfamPF000461.9E-863104IPR001356Homeobox domain
CDDcd000861.52E-963105No hitNo description
PROSITE profilePS5084845.333231462IPR002913START domain
SuperFamilySSF559613.02E-35233461No hitNo description
CDDcd088752.14E-125235458No hitNo description
SMARTSM002349.8E-77240459IPR002913START domain
PfamPF018528.1E-58241459IPR002913START domain
Gene3DG3DSA:3.30.530.207.2E-6337458IPR023393START-like domain
SuperFamilySSF559617.94E-26479717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPNQRP  60
NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN LEPLQAQHER HENQILKSDN  120
DKLRAENNRY KEALSNATCP NCGGPAAIGE MSFDEQHLRI ENARLREEID RISAIAAKYV  180
GKPLGSSFAP LAVHAPSRSL DLEVGNFGNQ AGFVGEMYGT GDILRSVSIP SETDKPMIVE  240
LAVAAMEELV RMAQAGDPLW VSTDNSIEIL NEEEYFRTFP RGIGPKPLGL RSEASRESAV  300
VIMNHINLVE ILMDVNQWSC VFSGIVSRAL TLEVLSTGVA GNYNGALQVM TAEFQVPSPL  360
VPTRENYFVR YCKQHTDGSW AVVDVSLDSL RPNPISRTRR RPSGCLIQEL PNGYSKVTWI  420
EHMEVDDRSV HAMYKPLVHS GLAFGAKRWV STLERQCERL ASSMASNIPA GDLSVITSPE  480
GRKSMLKLAE RMVMSFCSGV GASTAHAWTT MSSTGSDDVR VMTRKSMDDP GRPPGIVLSA  540
ATSFWIPVAP KRVFDFLRDE NSRSEWDILS NGGMVQEMAH IANGREPGNC VSLLRVNSGN  600
SSQSNMLILQ ESCTDASGSY VIYAPVDIVA MNVVLSGGDP DYVALLPSGF AILPDGSAEG  660
GDGNQQVVSS STASGSCGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV  720
ACDAGGAAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528680.0AK352868.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472664.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_018472665.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A3P6A9L90.0A0A3P6A9L9_BRACM; Uncharacterized protein
STRINGBo3g048340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]