PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676755620

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Trihelix

Protein Properties

Length: 978aa MW: 109092 Da PI: 7.1001

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676755620	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.8	6.8e-09	161	246	2	75
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L +a r ++ ++g+ ++ + +ev+++++++g++r +k kw+n+ ++++k++e+ek++ e+ 676755620 161 WKPHEMLLLAKAWRVQYQTQGTGSgsgsgsgegrgkTRAEKDREVAEYLKQKGVNRDSKIAGTKWDNMLGEFRKVNEWEKGGDREK 246 777777777777775444444432233333333333999999**************************************985443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-7	159	244	No hit	No description
CDD	cd00180	2.17E-10	824	967	No hit	No description
SuperFamily	SSF56112	5.05E-13	827	967	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	7.4E-6	831	970	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISSP KDSSHDHQTP TPSLIHHHHH HHQHQSFLPS PIFIPTVSSP 60 GAPVIPKRPR FSSSGGLSPP QWKALPSPST VPALPSPSTV PTAATFSSTL SPSTAVVAAS 120 STDTAGSSPP GQEATNTEKQ QPETESFQHK FRKGKYVSPV WKPHEMLLLA KAWRVQYQTQ 180 GTGSGSGSGS GEGRGKTRAE KDREVAEYLK QKGVNRDSKI AGTKWDNMLG EFRKVNEWEK 240 GGDREKFGKS YFRLSPYERK QHRLPASFDE DVYQELALFM GPRARTPTIK RSSAGAPVDV 300 TLTPPSVETL PPILHPPLMT SRDDYIDNNR VTSIGRGKRL ALSIAGDDHP QYPYSHNIAR 360 GSGLFSNRSL YYNPSCETIP SSFSSSSSLK DLRRIGKIRL TWEESVNLWA EEGELDYGRI 420 RVSGSSFLNA DELTYLDDSM VACTMESFED GPLRGFSLDK FISGQHLKVF GRQKSTSSSA 480 PSPSGSMAGS FDRAQLPLSV PIYKSISTLE FQDPSEHYLS RLRVPAENLP NLFELARYLR 540 EPPPENLRFP IRRDVYKDLP PGKELFFSTS STELLDCRAI TYDIISPIVS RLNPNYGFVI 600 SSKDSLIPLW DDCVNRMVSK FCEMVVLRKP DSSSCVENVQ DQWPNIMGFI KGFGLWRGEE 660 TEKVREGAAD PSSLLVEKIL WSYDDLPYIL GYHAIGFTVT FCTLSRSSQD RVICTDLFSF 720 DVSSPSDRIK ALVPCYRLAS LLPLLADRCT MRHSCFNDFE RISHGDFVTE VTPHTVTKYY 780 PSKRKWSGVK GIYDFLDQRV PHAEHLDGAS EKELSLSFQP RGIRVKPCNV DQLIVSLMCV 840 TRALVALHDL SFMHRDMRWE NVMRSAETAT TTSDAGWIVC GFDEAAESPQ LNPHHPMAEE 900 EEEEHGSHPP EMERGLHAVK VDVWGVGYMI KTCGLSNVPK MLRELQGKCL EPNQENRPTA 960 ADCFHHLLQV QSASTSSY

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISSP KDSSHDHQTP TPSLIHHHHH HHQHQSFLPS PIFIPTVSSP  60
GAPVIPKRPR FSSSGGLSPP QWKALPSPST VPALPSPSTV PTAATFSSTL SPSTAVVAAS  120
STDTAGSSPP GQEATNTEKQ QPETESFQHK FRKGKYVSPV WKPHEMLLLA KAWRVQYQTQ  180
GTGSGSGSGS GEGRGKTRAE KDREVAEYLK QKGVNRDSKI AGTKWDNMLG EFRKVNEWEK  240
GGDREKFGKS YFRLSPYERK QHRLPASFDE DVYQELALFM GPRARTPTIK RSSAGAPVDV  300
TLTPPSVETL PPILHPPLMT SRDDYIDNNR VTSIGRGKRL ALSIAGDDHP QYPYSHNIAR  360
GSGLFSNRSL YYNPSCETIP SSFSSSSSLK DLRRIGKIRL TWEESVNLWA EEGELDYGRI  420
RVSGSSFLNA DELTYLDDSM VACTMESFED GPLRGFSLDK FISGQHLKVF GRQKSTSSSA  480
PSPSGSMAGS FDRAQLPLSV PIYKSISTLE FQDPSEHYLS RLRVPAENLP NLFELARYLR  540
EPPPENLRFP IRRDVYKDLP PGKELFFSTS STELLDCRAI TYDIISPIVS RLNPNYGFVI  600
SSKDSLIPLW DDCVNRMVSK FCEMVVLRKP DSSSCVENVQ DQWPNIMGFI KGFGLWRGEE  660
TEKVREGAAD PSSLLVEKIL WSYDDLPYIL GYHAIGFTVT FCTLSRSSQD RVICTDLFSF  720
DVSSPSDRIK ALVPCYRLAS LLPLLADRCT MRHSCFNDFE RISHGDFVTE VTPHTVTKYY  780
PSKRKWSGVK GIYDFLDQRV PHAEHLDGAS EKELSLSFQP RGIRVKPCNV DQLIVSLMCV  840
TRALVALHDL SFMHRDMRWE NVMRSAETAT TTSDAGWIVC GFDEAAESPQ LNPHHPMAEE  900
EEEEHGSHPP EMERGLHAVK VDVWGVGYMI KTCGLSNVPK MLRELQGKCL EPNQENRPTA  960
ADCFHHLLQV QSASTSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676755620

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610231.1	0.0	PREDICTED: uncharacterized protein LOC106316914
Refseq	XP_013719901.1	0.0	uncharacterized protein LOC106423678
TrEMBL	A0A0D3EA64	0.0	A0A0D3EA64_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E0P2	0.0	A0A3P6E0P2_BRAOL; Uncharacterized protein
STRING	Bo9g103570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein