PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676755578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 342aa MW: 39260.7 Da PI: 8.6337 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.3 | 6.2e-32 | 56 | 109 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ 676755578 56 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 109 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.273 | 52 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 52 | 110 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-14 | 54 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 56 | 111 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 57 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MIPSMEGTDK TDREEEEEEE EEDGEEEESK VSSNSTVEAE VDKKTKVRPY VRSKVPRLRW 60 TPDLHLRFVR AVERLGGQER ATPKLVRQMM NIKGLSIAHV KSHLQMYRSK KMDDQGQAIS 120 DHRHFIETST DRNIYKLSQL PMFRGYNINH NHDSPFRYGS KFSNASLWNS SSHETNRSLI 180 DRPGLIRGSS VSNNIRGSEY WTNNRSFQNS YSSSSVSNHL SKLRHSHQER TNLATFNSIQ 240 GHSRTIEKFE IGIEESTNHA YCNKRTGKRN ASTSIDLDLD LSLKLRVPEK TILEETETAA 300 TTTDQTLSLS LCSWKKSRVL IKRDEEDRTV KIGQASTLDL TL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-15 | 57 | 111 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-15 | 57 | 111 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-15 | 57 | 111 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-15 | 57 | 111 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676755578 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634096.1 | 0.0 | PREDICTED: putative two-component response regulator ARR20 | ||||
Refseq | XP_013705129.1 | 0.0 | myb family transcription factor PHL8-like | ||||
Refseq | XP_013705130.1 | 0.0 | myb family transcription factor PHL8-like | ||||
TrEMBL | A0A0D3BQY8 | 0.0 | A0A0D3BQY8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g029640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-163 | G2-like family protein |