PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676755474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | RAV | ||||||||
Protein Properties | Length: 362aa MW: 40509.3 Da PI: 8.3958 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.5e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a +++g 676755474 62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 110 89****9888.8*********3.....5**********99***********9998 PP | |||||||
2 | B3 | 102.9 | 1.8e-32 | 189 | 292 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ ++++l+++ 676755474 189 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSSVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSDGQDQQLYIG 288 89****************************9888889***************************************************987799999999 PP EE-S CS B3 96 vfrk 99 + ++ 676755474 289 WKSR 292 9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-17 | 62 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.30E-26 | 62 | 120 | No hit | No description |
Pfam | PF00847 | 5.3E-8 | 62 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-20 | 63 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.192 | 63 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-29 | 63 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-42 | 181 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-33 | 184 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.41E-29 | 187 | 280 | No hit | No description |
Pfam | PF02362 | 2.5E-29 | 189 | 292 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.48 | 189 | 293 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-26 | 189 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEVSSVDEST TSTGSVCETP AIAPAMTSGK SSVNLHRMGS GSSVVLDTEN GVEAESRKLP 60 SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDVAVHRFRG RDAVTNFKEA 120 KLDDGEIEFL NSHSKSEIVD MLRKHTYSEE LEQSKRRRNG NGNTVRTLTS LTNEDGVSTT 180 EFRSAEPLFE KAVTPSDVGK LNRLVIPKHH AEKHFPLPSS SVSVKGVLLN FEDVTGKVWR 240 FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGSDVETG 300 RVLRLFGVNI SPAISRNDVV VGNKRVNDTE MLSLDIKHMY ALAITVYMVF DDIQTKDTPK 360 SE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-74 | 185 | 299 | 10 | 124 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676755474 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353075 | 0.0 | AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442582.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Refseq | XP_018442711.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 0.0 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1J3F7I9 | 0.0 | A0A1J3F7I9_NOCCA; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
STRING | Bra019821.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 0.0 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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