PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676755438

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Trihelix

Protein Properties

Length: 417aa MW: 47983.5 Da PI: 7.6092

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676755438	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.4	3.4e-27	88	169	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ s +++y++++e 676755438 88 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---GSAKMSYYKEIE 169 ******************************************************************94...566899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-4	78	149	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	80	144	IPR017877	Myb-like domain
SMART	SM00717	0.0096	84	146	IPR001005	SANT/Myb domain
CDD	cd12203	4.31E-29	86	151	No hit	No description
Pfam	PF13837	1.3E-20	87	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MFVSDKPRPN DFYKDDNTNS SSNARDMIID VTSNGAGDLP PHNHHHNHHN NHNHHHHPHP 60 LQPQQILLGE SSSEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI 120 SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KHHDRGNGSA KMSYYKEIED ILRERSKKVM 180 TTTQYSKSPN TPTAKVDSFM QFTDKGFDDP SISFGSVEAN GRPALNLERR LDHDGHPLAI 240 TTVDAVAANE VPPWNWRETP GNGKSQKKKA YSGDAHGQPF GGRVITVKFG DYTRRIGVDG 300 TAEAIKETIR SAFGLRTRRA FWLEDEDQVV RCLDRDMPLG NYLLHVDDGL TIRVCHYDES 360 NQLPVHTEEK IFYTEEDYRE FLTRRGWACL QVDGFRNIDN MDDLQPGAVY RGVRERM

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MFVSDKPRPN DFYKDDNTNS SSNARDMIID VTSNGAGDLP PHNHHHNHHN NHNHHHHPHP  60
LQPQQILLGE SSSEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI  120
SAKMREKGFD RSPTMCTDKW RNLLKEFKKA KHHDRGNGSA KMSYYKEIED ILRERSKKVM  180
TTTQYSKSPN TPTAKVDSFM QFTDKGFDDP SISFGSVEAN GRPALNLERR LDHDGHPLAI  240
TTVDAVAANE VPPWNWRETP GNGKSQKKKA YSGDAHGQPF GGRVITVKFG DYTRRIGVDG  300
TAEAIKETIR SAFGLRTRRA FWLEDEDQVV RCLDRDMPLG NYLLHVDDGL TIRVCHYDES  360
NQLPVHTEEK IFYTEEDYRE FLTRRGWACL QVDGFRNIDN MDDLQPGAVY RGVRERM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	9e-56	82	167	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676755438

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	0.0	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.
GenBank	ATHGT	0.0	L36806.1 Arabidopsis thaliana (clone pDGT1) GT-1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024009039.1	0.0	trihelix transcription factor GT-1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1J3JZA3	0.0	A0A1J3JZA3_NOCCA; Trihelix transcription factor GT-1 (Fragment)
STRING	Bra019721.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]