PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754910
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 849aa    MW: 94452.1 Da    PI: 10.3752
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754910genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.2e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  676754910  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKIYDFSS 59
               68***********************************************96 PP
2K-box52.61.9e-18871761099
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +++++    ++ + +k+e+e Lq  + +l+G++L+ +s+ +L +Le+qL++sl +++++K+++ll+q+e+++ +ek++ een+ Lrk+++
  676754910  87 CSSENGAVLRKDDSMKNELERLQLAIERLKGKELDGMSFSDLISLENQLNDSLHSVKDQKTQILLNQVEKSRLQEKKALEENQILRKQVK 176
                55556666667789*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-30270IPR002100Transcription factor, MADS-box
CDDcd002651.88E-39269No hitNo description
PRINTSPR004047.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.16991181IPR002487Transcription factor, K-box
PfamPF014861.4E-1499175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKIYDFSSG  60
CMEKILTRYG YSALSADQRQ REQLLLCSSE NGAVLRKDDS MKNELERLQL AIERLKGKEL  120
DGMSFSDLIS LENQLNDSLH SVKDQKTQIL LNQVEKSRLQ EKKALEENQI LRKQVKVYQN  180
PYTNPVCSSP YILSSKLIYP QVEMFGKASS GPKMLSEMPQ LSSPQAEAES SSSDEDENDN  240
EEHHSDTSLQ LGLSSSGYFT KKKKPKIESP CDNSGSQKTI TRGFDKRQKV QVAVVAVNPT  300
RPDPNQPGAV FIFVANNEIK MSNKRRNREE SQKRKKRKRR ALSSSLSLSA SRHTTKAERM  360
GLISSAKETN HSGRGGGGMG LLFVFFPDHN DNDSHSPSPS SSSSPTTPTL FRTRSSRLLL  420
SKAQSTISIC ILLLFLTLFL FTLSTFEPSS GFPAVSSPRS HSHRRFLLNR DVVSGAGTGV  480
GVTRRTRSNR FALQGMGTLF LRGTKSMHDL IVAHVASDTT EEDLRLFTRL LHRSGVTSRS  540
DVVLLFNSPS SVNRFSGLIE QENHSFSKLV DAYLNSNHTS LNQTDPVWGF NLNRFMKKHS  600
KKEASSEPLW GKKTHRANNT DNSNETESAP ELTHGSVVGF DVTELDPENS LSGFMDHVVP  660
ISLRRWACYP MLLGRVRRSF KHVMLVDAKT SLFLGDPFTR IRNRSPDSVL FFSTSSKHKV  720
NAAVLMGGAK GVRRLSSSMH TEIVRATMSQ QQHKKKSFVS ESVVLSQLVG NVHMTKNFEV  780
VMSESSSSSV IPEASSLAEL RTRNSAAASI KSHDIVQRGG NSNHPDVMAI IMKRICSSSQ  840
LDSSVYSYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19169169MEF2 CHIMERA
6byy_B3e-19169169MEF2 CHIMERA
6byy_C3e-19169169MEF2 CHIMERA
6byy_D3e-19169169MEF2 CHIMERA
6bz1_A3e-19169169MEF2 CHIMERA
6bz1_B3e-19169169MEF2 CHIMERA
6bz1_C3e-19169169MEF2 CHIMERA
6bz1_D3e-19169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323335KRRNREESQKRKK
2323338KRRNREESQKRKKRKR
3323339KRRNREESQKRKKRKRR
4333338RKKRKR
5333339RKKRKRR
6334339KKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402882.10.0uncharacterized protein LOC18019956
TrEMBLV4L2210.0V4L221_EUTSA; Uncharacterized protein
STRINGXP_006402882.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-116AGAMOUS-like 18