PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754832
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 386aa    MW: 41978.7 Da    PI: 5.8996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754832genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09218265455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  676754832 218 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 265
                8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.92E-9212269No hitNo description
SuperFamilySSF474592.36E-15212283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15214282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6218265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDLTGGFGAR SSGVGPCREA QGLESLHLGG DEFRQLSTLP PENAGGFTAL LELPPTQAVE  60
LLHFTDSSSS SQAAAVVTGI GVDVPPPPLH SYGTLTFPCN SVLMERAARF SVIATEQQQN  120
GNVSGETTTT SSAPSNSSAN LDRVKTEPAE ADSSQRLVSD QAALETQSPC PSHNNRTGKR  180
KEFDKKGKSS SKKNKSSEEN EKLPYVHVRA RRGQATDSHS LAERARREKI NARMKLLQEL  240
VPGCDKIQGT ALVLDEIINH VQSLQRQVEM LSMRLAAVNP RIDFNLDTIL ASENGSLMDG  300
SFNGTAMQLA WSHQVTETEQ AYHHRQLQPP PPPPPQQWPF DGLNQPAWGR EEDQDHGNDH  360
NSLMAVSENL MVGSANLHPN QVKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850745.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y30.0A0A178V8Y3_ARATH; Uncharacterized protein
STRINGXP_006402839.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]