PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676754740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19195 Da PI: 6.836 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.3 | 1.2e-14 | 13 | 66 | 1 | 60 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60 +C aCk+lrrkCak+Cv+apyf++eq +++fa++hk+ + l++lk+ +a++s 676754740 13 PCGACKFLRRKCAKGCVFAPYFCHEQgASHFAAIHKVVNLQAQLEILKQ-------QAAQS 66 7*************************89*********999888888887.......33444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.231 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-11 | 13 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSSSSSSSGS GSPCGACKFL RRKCAKGCVF APYFCHEQGA SHFAAIHKVV NLQAQLEILK 60 QQAAQSMMFA DSPSSENPNS YYGDTTKTPS YHHDQQEHQN IYHHHGQTHL ANQIGNSGMG 120 QHGDATANSY PPEKSRGFGE FSIYPELEQH LNTFNQEYLK ELHSENFGYI SFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676754740 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473849 | 3e-57 | AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds. | |||
GenBank | AF447893 | 3e-57 | AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds. | |||
GenBank | AL137081 | 3e-57 | AL137081.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24. | |||
GenBank | BT025282 | 3e-57 | BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds. | |||
GenBank | CP002686 | 3e-57 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013659935.1 | 5e-92 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 2e-83 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A291LR11 | 1e-90 | A0A291LR11_BRARR; Transcription factor LBD29 | ||||
TrEMBL | A0A397Y6T0 | 1e-90 | A0A397Y6T0_BRACM; Uncharacterized protein | ||||
STRING | Bo8g092560.1 | 2e-89 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-85 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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