PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754682
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 641aa    MW: 73202.3 Da    PI: 8.7003
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754682genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.22.5e-1426122186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +Liea  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++  s+  s++p+f++l+
  676754682  26 CWSEEATFTLIEAWGSRYIDLSRGNLRQKHWQEVANAVndrhfntgrhvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSE--SGYISQWPFFSSLD 122
                7************************************************997777789**********************998..78999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-2524124No hitNo description
SuperFamilySSF813836.28E-12280361IPR001810F-box domain
SMARTSM002562.5E-4285324IPR001810F-box domain
Gene3DG3DSA:1.20.1280.503.7E-4285346No hitNo description
PfamPF006461.6E-4286318IPR001810F-box domain
TIGRFAMsTIGR016402.1E-32436593IPR017451F-box associated interaction domain
PfamPF082683.6E-33458585IPR013187F-box associated domain, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MKDGVNDSFS PGSSRPSPST LCREDCWSEE ATFTLIEAWG SRYIDLSRGN LRQKHWQEVA  60
NAVNDRHFNT GRHVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESG YISQWPFFSS  120
LDDLLRETFP TSTASDSTDY QRPALPMTII PVPVAPRSAI PRRSRSRSSG GGGKRKKRER  180
ESKEEGYKEV AEAIERLGKI YERVEERKRK EMVELEKQRM RFAKELECHR MQLFTEMQVR  240
LHKLRRHSRS KAPTSTALEY GMMDFPSRVA AIWFNKPTKT MSPFFPTDVT TDIFARLPAK  300
SAAKCRILSK QWRSILRSAD FADLLLTHSW TRPRLLFAVE RNCVWRFFSS PQPQPPHATS  360
SSSSPSPVVH VEPHFKFSED VSRFLCSYAS GLVFFPDMWI PKEGDYSNPV VCNPITGKYV  420
TLPEVSTSTG SRQGGTGDLS WRSKNNDCPC YDRCLSEGIC IDGVLYYLAE NICDLPRVVV  480
CFDVRSEEFK FIEADCFSDQ DTVQLINYKG NVAGVDWKYA KAEGKIVLEL SLWVLEDVEK  540
KEWLKSVHIF SEEKIVHRCN FSVVGMTAAG EIVLAMDYTS KPYYVFFFAP EKNTLRCVEI  600
QGFGSSLEAL GSRGRFRVFV DYVEDLTVHD AVQHKSSISV P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754682
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532441e-127AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663491.11e-174F-box protein At3g57590-like
RefseqXP_013692472.11e-174F-box protein At3g57590-like
SwissprotQ9SVX41e-121FB205_ARATH; F-box protein At3g57590
TrEMBLA0A078IJH91e-174A0A078IJH9_BRANA; BnaA09g55170D protein
STRINGBra007406.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-83sequence-specific DNA binding transcription factors