PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 401aa    MW: 45121.8 Da    PI: 6.6557
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10199251557
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+    
  676754528 199 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTN 251
                9******************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-13195259IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53197260IPR004827Basic-leucine zipper domain
PfamPF001705.9E-9199250IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-10199250No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-11199253No hitNo description
CDDcd147032.21E-22200249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDKEKSPAPC GGLPPPSPSG RCSPFSDTTT GHGSDANRLS HDMSRMLDNP PKKIGHRRAH  60
SEILTLPDDL SFDSDLGVVG TNADGASFSD ETEEDLLSMY LDMDKFNSSA TSSAQVGEPS  120
GTAWKNESVI RTGSTYNPQN TLGGFGERPR VRHQHSHSMD GSLNINEMLM SGNEDDSVVD  180
AKKSMSATKL AELALIDPKR AKRIWANRQS AARSKERKTR YIFELERKVQ TLQTEATTLS  240
AQLTLLQRDT NGLTIENSEL KLRLQTMEQQ VHLQDELNEA LKEEIQHLKV LTGQVTSNGS  300
SAMNYGSFGS NQQFYSSNQS MQTILAAQQL QQLQLHSQKQ QQQQQQQQQQ QQQQQQQQQQ  360
QFQFQQQQLQ QLLHHRLRQQ EQQNGTAEMR KQKPFQGQNE S
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532830.0AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410269.10.0probable transcription factor PosF21
RefseqXP_006410270.10.0probable transcription factor PosF21
SwissprotQ040880.0POF21_ARATH; Probable transcription factor PosF21
TrEMBLE4MXN60.0E4MXN6_EUTHA; mRNA, clone: RTFL01-24-D07
TrEMBLV4M9E90.0V4M9E9_EUTSA; Uncharacterized protein
STRINGXP_006410269.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]