PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676754514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20275.7 Da PI: 5.5112 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.8e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C +Ck+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ ll+e 676754514 7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQVILLRE 106 7***********************9979******************************************************************988877 PP DUF260 100 e 100 e 676754514 107 E 107 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.903 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPVHD 60 RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VILLREEATR KFPQSDCTEE 120 DKVLAQDMPQ DPHSWFHQVV SDSNHNQVSD VASTSMDRNE SFCSSNDSLY YQELMFPWST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 3 | 110 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 3 | 110 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676754514 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473850 | 1e-139 | AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410263.1 | 1e-121 | LOB domain-containing protein 14 | ||||
Swissprot | Q9SJW5 | 1e-101 | LBD14_ARATH; LOB domain-containing protein 14 | ||||
TrEMBL | V4NXR6 | 1e-119 | V4NXR6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410263.1 | 1e-120 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31310.1 | 2e-86 | LOB domain-containing protein 14 |
Publications ? help Back to Top | |||
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