PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754352
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 335aa    MW: 37966.6 Da    PI: 7.734
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754352genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.1e-221053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               + en+  rq tfskR+ngi+KKA+ELS+LCd+++ +++fs+tgk
  676754352 10 KLENSNGRQATFSKRKNGIMKKASELSILCDIDIVLLMFSPTGK 53
               679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.03E-23163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.796155IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-32160IPR002100Transcription factor, MADS-box
CDDcd001202.61E-27255No hitNo description
PRINTSPR004041.2E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-211155IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRVKLKIKK LENSNGRQAT FSKRKNGIMK KASELSILCD IDIVLLMFSP TGKPYLCYGK  60
RRKVESLETL KKTFQKLDHD VNIREFIASS NSTTEDLSTQ VRILQARISE IHGRLRYWTE  120
PDKINNVEDL GQLEISIRQS LEQLRAHKLQ DGIQIPLEQQ LQSMSWILNS NTTNVVPEEH  180
NSIPPREVVE GSASSSFGSY PGYFGTGKSP EITISGQETS FLDELTATNG HLKPQTNTQQ  240
QFTNNNNIIS YNPSLQNDLN HHQTLPPHPH HPPVFNFPMN QREYHMNGFF EAPPPGSSAY  300
NNITNQARFG SNSSSLPCSI SMFDEYLFSQ MQQPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941141e-138AB094114.1 Arabidopsis thaliana At2g03060 mRNA for MADS-box protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515465.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
SwissprotQ1PFA41e-179AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A397Z3D70.0A0A397Z3D7_BRACM; Uncharacterized protein
TrEMBLA0A397ZA280.0A0A397ZA28_BRACM; Uncharacterized protein
TrEMBLM4E7N60.0M4E7N6_BRARP; Uncharacterized protein
STRINGBra024792.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-151AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]