PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676754264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28129 Da PI: 9.0298 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e++s 676754264 9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 72.9 | 9.1e-25 | 82 | 161 | 9 | 88 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +++a+ ++ + e++ Lk+e ++Lq+++ +++G++L+ LslkeLq+LeqqL+ sl ++R++K+ ll +q+ee++ k +el+ 676754264 82 NCKAEDQEACSEVDLLKDEFSKLQEKHLQMQGKGLNILSLKELQHLEQQLNVSLISVRERKELLLSKQLEESRLKVQELR 161 688999***********************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.898 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.14E-45 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-32 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-15 | 86 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.899 | 87 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0060862 | Biological Process | negative regulation of floral organ abscission | ||||
GO:0060867 | Biological Process | fruit abscission | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:2000692 | Biological Process | negative regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFAST 60 GMKKTLLRYG NYQSSPDAPL INCKAEDQEA CSEVDLLKDE FSKLQEKHLQ MQGKGLNILS 120 LKELQHLEQQ LNVSLISVRE RKELLLSKQL EESRLKVQEL RSFLPSINQH YAPTYTRCFA 180 MDPKNSRVNN SCLDDMDCSL QKTNSDTTLQ LGLPGEAQDR RHEGNRESPS SDSVTTSTTR 240 ATAQRIRLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6byy_B | 3e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6byy_C | 3e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6byy_D | 3e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6bz1_A | 4e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6bz1_B | 4e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6bz1_C | 4e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
6bz1_D | 4e-25 | 1 | 76 | 1 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00508 | DAP | Transfer from AT5G13790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676754264 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU22681 | 1e-154 | U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012194.1 | 1e-156 | agamous-like MADS-box protein AGL15 isoform X3 | ||||
Swissprot | Q39295 | 1e-142 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A1J3CW26 | 1e-140 | A0A1J3CW26_NOCCA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A1J3H8J4 | 1e-140 | A0A1J3H8J4_NOCCA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A1J3INI3 | 1e-140 | A0A1J3INI3_NOCCA; Agamous-like MADS-box protein AGL15 | ||||
STRING | Bra006214.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7518 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 6e-98 | AGAMOUS-like 15 |