PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754154
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARF
Protein Properties Length: 547aa    MW: 62824.9 Da    PI: 9.1246
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754154genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3642.4e-2067164195
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f kvl+ sd+ ++g l+l k++a e+     ++++  s++++ +d++g +W++k+i+r++++r+v+t+GW+ Fv  + L +gD++vF +   +++e +v+
  676754154  67 FSKVLSVSDTKRQGGLSLIKRHAIEClppldMSQPIPSQDIIAKDLNGHEWKFKHIFRGTPQRHVFTSGWSTFVTKQVLVAGDSFVFIRG--ENGESRVG 164
                889***************************9666677889***********************************************943..55555565 PP
2Auxin_resp88.31.4e-29193272183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a +a+++k++F+v+Y+Pr+  s+Fv+++ek+++a+++k+ +G+Rf m+fe+ d++e+r+sGt+v v+d+ + +W++S+WrsLk
   676754154 193 ALNAITNKCMFDVFYKPRS--SQFVINFEKFVDAVNKKFNIGSRFIMKFEGSDFNEIRYSGTIVEVKDFCT-HWKDSEWRSLK 272
                 6799**************6..9**********************************************776.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-2563164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-3263181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1765163No hitNo description
PfamPF023623.8E-1867163IPR003340B3 DNA binding domain
SMARTSM010199.8E-1867169IPR003340B3 DNA binding domain
PROSITE profilePS5086311.09667169IPR003340B3 DNA binding domain
PfamPF065071.5E-26193272IPR010525Auxin response factor
PfamPF023092.3E-6333407IPR033389AUX/IAA domain
SuperFamilySSF542771.62E-6368436No hitNo description
PROSITE profilePS5174514.35371454IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MASNQIINSQ PEFLGNLVTT INDDLCQLKP IFDLPTKIRC KVFRIERKEV EIPIPNCDND  60
VQNIKYFSKV LSVSDTKRQG GLSLIKRHAI ECLPPLDMSQ PIPSQDIIAK DLNGHEWKFK  120
HIFRGTPQRH VFTSGWSTFV TKQVLVAGDS FVFIRGENGE SRVGTKKAVY QQVNIPSSVI  180
SKESMHHSVI ATALNAITNK CMFDVFYKPR SSQFVINFEK FVDAVNKKFN IGSRFIMKFE  240
GSDFNEIRYS GTIVEVKDFC THWKDSEWRS LKVQWDEAAT IPRPDKVSPW EIEPLTPAST  300
ILESNFLKNK RLREVHDFGK ETLFKTTDTM GSIDSYQKSI ILKTSNEKNP VQIQTLESLK  360
EIQGKQISST RSRTKVQMDG VDVRRTIDLN VFNGYNQMIE ELEKLFDIKG KLLMKNQWKI  420
IFKDNDGGIM LVRDDLWPCE DDPSGWEKIH PITAEFMSAR QSASVQQVIR GSSRWVSVYE  480
NIVENSEQTS GKDDRITRLG RTSRDEMMLS RSRIMGEMDW LGILWTANDA KLITITRRLG  540
RSREGNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-951429549355Auxin response factor 1
4ldy_B2e-951429549355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754154
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543938.10.0auxin response factor 22-like
RefseqXP_022544007.10.0auxin response factor 22-like
SwissprotQ9LQE81e-119ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A397YY970.0A0A397YY97_BRACM; Auxin response factor
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.11e-122auxin response factor 14