PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754080
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 619aa    MW: 70454.2 Da    PI: 8.1688
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754080genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.8e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye+ss
  676754080  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRGKLYEFSS 59
               79***********************************************96 PP
2K-box75.31.7e-2582172999
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                + e ++++ + e   L ++ie+L+ ++R+++Ge+L+  s++eLqqLe+qL++sl+kiR+kK++ll+e+ie l++ke++l  enk+L++k+e
  676754080  82 KIEDNSQQAKGETYGLARKIEQLEISKRKFMGEGLDASSIEELQQLENQLDRSLTKIRAKKYQLLREEIESLKEKERNLTAENKMLKEKYE 172
                45677899999*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.903161IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.81E-36372No hitNo description
SuperFamilySSF554552.88E-31374IPR002100Transcription factor, MADS-box
PfamPF003192.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2584171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.18887177IPR002487Transcription factor, K-box
Gene3DG3DSA:3.30.200.201.4E-5192227No hitNo description
SuperFamilySSF561127.64E-5195249IPR011009Protein kinase-like domain
Gene3DG3DSA:1.25.40.103.2E-26325523IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF819016.15E-17327470No hitNo description
PfamPF0823894379410IPR006597Sel1-like repeat
SMARTSM006710.35379414IPR006597Sel1-like repeat
SMARTSM006717.0E-7415450IPR006597Sel1-like repeat
PfamPF082386.8E-6416450IPR006597Sel1-like repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RGKLYEFSSS  60
SSITKTIERY QKRIQDLGSN HKIEDNSQQA KGETYGLARK IEQLEISKRK FMGEGLDASS  120
IEELQQLENQ LDRSLTKIRA KKYQLLREEI ESLKEKERNL TAENKMLKEK YEMERGGIIP  180
RTSSSTTSED LDTEDSEMEV IRHILIHLLG FCSKRDEHYL VYEFMPNSNR AAHQLSWEKC  240
REIVKGIARR LRLNGRAYNW APLLVNKARN SNNSASLATK ARERGMHSRN KKAMEYVAKG  300
WSAIKEVERV IDYCELNDRR LIPLLRGAKE NFELALEADN LNTHARYWLS KLHLKYHVPG  360
ACKAVGAALL VEAADMGNAD AQYELGCRLR VENDHVQSDQ QAFHYIENAV DQLHPGALYL  420
LGIVYLTGDC VKQDVDSAVW CFHRASKKGH AGAAIAYGSL LLRGVQVPES LTRMNTVGVS  480
PPKRSRENKE MNPLEMAKEQ FQVAARAGCD LGLRWLHRLE QEEKLLRSQE DEEYCQSGHR  540
KCEATSEEIE PHEAIESIKP SREAMESVSL LHEALESVKP PRDAIVCITF PLASRGISEH  600
VERKAKLEIN SMNIQESSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15160160MEF2C
5f28_B4e-15160160MEF2C
5f28_C4e-15160160MEF2C
5f28_D4e-15160160MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0861720.0AY086172.1 Arabidopsis thaliana clone 21954 mRNA, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.17e-97AGAMOUS-like 14