PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753858
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 379aa    MW: 42634.7 Da    PI: 5.6414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753858genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849e-27107156150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  676753858 107 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 156
                79******************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.97399159IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-3699158IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-28100177IPR002100Transcription factor, MADS-box
CDDcd002656.45E-33100173No hitNo description
PRINTSPR004041.3E-24101121IPR002100Transcription factor, MADS-box
PROSITE patternPS003500101155IPR002100Transcription factor, MADS-box
PfamPF003191.6E-24108153IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-24121136IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-24136157IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGAEEAGEIR QASDKTTQNL ISRNQFLAWK RQKDAELSAK QAEAARKRQQ DIASGRVLMN  60
GRQRSKTLSL GVLEIVDQSI ITTTLDLDEE KLSSCFVNMG RVKLEIKRIE NTTNRQVTFS  120
KRRNGLIKKA YELSILCDID IALIMFSPSD RLSLFSGKTR IEDVFTRFIN LPNQERDNAI  180
IFPDPGRRPR YEPDPARFTS MEDYEVCEKQ LLDTLTHVVQ RREHLLSSHL SSYETSTMQQ  240
SIAGPFLNGV AEGWLPENGH NQAHLFDASA HSNQLRELSS AMYEPLLQGS SSSSNQNNMS  300
ECHVTNHNGE MFSEWAQAYS SSAMFASINQ HGGVGPSIEE MMPGQQSEIP AMTTTTEAQQ  360
AKHEVVDDYE TRVPQLSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-1999188191MEF2 CHIMERA
6bz1_B9e-1999188191MEF2 CHIMERA
6bz1_C9e-1999188191MEF2 CHIMERA
6bz1_D9e-1999188191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892711e-95AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022545267.11e-171agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ9LM461e-147AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0D3DQX01e-176A0A0D3DQX0_BRAOL; Uncharacterized protein
STRINGBo8g071330.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-141AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]