PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753472
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-PHD
Protein Properties Length: 813aa    MW: 92307.1 Da    PI: 4.439
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753472genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-104665091053
                HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  +e L ++F +n  ps++ r +L+k+l+L+ ++V+ WF+N R+
  676753472 466 AAVEKLRQVFVENELPSKDVRDRLSKELSLEPEKVSKWFKNTRY 509
                67899*************************************97 PP
2PHD41.82.4e-14191246151
                SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  676753472 191 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 246
                6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.67E-14183248IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-12187246IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976189246IPR019787Zinc finger, PHD-finger
CDDcd155049.13E-32191243No hitNo description
SMARTSM002497.7E-10191244IPR001965Zinc finger, PHD-type
PfamPF006281.6E-11191246IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590192243IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.843454514IPR001356Homeobox domain
SuperFamilySSF466892.61E-10456521IPR009057Homeodomain-like
SMARTSM003891.6E-10456518IPR001356Homeobox domain
CDDcd000868.27E-9457518No hitNo description
Gene3DG3DSA:1.10.10.602.6E-11457526IPR009057Homeodomain-like
PfamPF000465.0E-8466509IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MEESETKGRI EKETDKACVS VGKVGSTLLS SLMKKGKETT NKRKYTKRKT EEEICSKSSK  60
KKYSRGWVRC NEEAEEEKGK RTRKRKSKRQ QKGNKVEVDE ALRLQKRTRY LLIKMKMQQN  120
LIDAYATEGW KGQSREKIRP DKELERARKQ ILNCKLGLRD AIRQLDLLSS VGRMEEKAMA  180
PDGSIHHDHI FCAECNSREA FPDNDIILCD GTCNRAFHQK CLDPPLETES IPPGDQGWFC  240
KFCDCKMEII DTMNAQIGTQ FPVDSNWQVI FNVEASLPIG SEATLNNEAD WPSDDSEDGD  300
YDPEMKENGG GSSNRSDSGG GGDCDNDGES ISTSLSLASD GEALSTGSWE GHEFGNMVEP  360
CETSNEETVC GPRQRKTVDY TKLYHEMFGK DAVLQEQGSE DEDWGPSDRR KRKKESAAAG  420
TFVTMCGNSK NDQDVEEFPE QEQRERGSVS VEGKVGRRPM FRLPRAAVEK LRQVFVENEL  480
PSKDVRDRLS KELSLEPEKV SKWFKNTRYM ALKNRKTESM SQPEDSKAVS GDSRPEAVMQ  540
NNEENSEIQD TVVETVTERT TEINGIQNAL DETVMEKNTE VKELQDSSVD DDMEDTETKE  600
VQDAVDDVME KNTETNEMQD TMDDVMVKKT ETKEMQDTVD VEKNTETNEI QDTMDETNTD  660
VNEIRETVDD SVPLGYDDST NHLTASVCND SQEEIEHANV SFPTLAEDES QQYLEQKDSS  720
FAIVPHEELS NEISLETPLE DKETESKMTE EEEFEAMMEV LCRAENKLLD VTQRLERFRA  780
PKGRKKLGKS YSCLLDEDSV VYVPTAEIKQ KRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186TRKRKS
2409413RKRKK
3409414RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753472
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412784.10.0pathogenesis-related homeodomain protein
RefseqXP_006412785.10.0pathogenesis-related homeodomain protein
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4MG340.0V4MG34_EUTSA; Uncharacterized protein
STRINGXP_006412784.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]