PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753314
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 389aa    MW: 42609.2 Da    PI: 6.7935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753314genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00052502851555
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  676753314 250 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 285
                5566788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-5245289No hitNo description
SuperFamilySSF474596.67E-10245296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-7250292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAAGNPNWWN VSGGMRPPPP LMGHQQGPLQ PQMTPNNNYV RPRMMPTLLP HFLPYPATSS  60
SSSSSPSLPN NPNLSSWLES NDLPPESWSL SQLLLGGLMM GEDERLEMMS NHSHHDEQHH  120
NFQGKMRLEN WEEQVLSHQQ ASMGVVDIKQ ESNINNNGYL LSSPNSPPNK SCVTTTTTTS  180
LNSNDDNNNN NNMLDFSSNH SGLNLSEGRH IPPDRSSESN SLEIGGSTNK KPRLQPSPSS  240
QSTLKVRKEK LGGRIAALHQ LVSPFGKTDT ASVLSEAIGY IRFLQSQIEA LSHPYFGSTA  300
SGNMRHQQHL QGDRSCLFPE DPGQLVNDRC MKRRGAPSSS TENQNANEVA KNDLRSRGLC  360
LVPISCTLQV GSDNGADYWA PALGSAGFH
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886340.0AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0813160.0AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBankBT0001210.0BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438345.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLM4D3M90.0M4D3M9_BRARP; Uncharacterized protein
STRINGXP_010438345.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]