PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753166
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 1268aa    MW: 142307 Da    PI: 7.6813
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753166genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.4e-16899940243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                ri n+  r +t+ kR++ +lKKA E S+LC+++ ++ii++++
  676753166 899 RITNEKTRITTYKKRKACLLKKADEFSTLCGVNTCLIIYGPS 940
                89**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.2E-564201IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.26E-6027376No hitNo description
SMARTSM003653904874No hitNo description
SMARTSM003691504872IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.5795072IPR001611Leucine-rich repeat
PfamPF138551.6E-674133IPR001611Leucine-rich repeat
PROSITE profilePS514504.6327496IPR001611Leucine-rich repeat
SMARTSM0036526096122No hitNo description
SMARTSM003691496120IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.1198120IPR001611Leucine-rich repeat
PROSITE profilePS514505.271122144IPR001611Leucine-rich repeat
PfamPF135161144165IPR001611Leucine-rich repeat
SMARTSM0036597144170No hitNo description
SMARTSM00369290144164IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.617146169IPR001611Leucine-rich repeat
PfamPF135161.3168184IPR001611Leucine-rich repeat
SMARTSM0036952168192IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.31170192IPR001611Leucine-rich repeat
SMARTSM00365510192213No hitNo description
PROSITE profilePS514505.548194215IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.4E-27202372IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003655.2216245No hitNo description
SMARTSM0036925216239IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.226218241IPR001611Leucine-rich repeat
PROSITE profilePS514505.379266287IPR001611Leucine-rich repeat
PROSITE profilePS514505.332291313IPR001611Leucine-rich repeat
SMARTSM00365750338359No hitNo description
SuperFamilySSF520581.93E-12363476IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.616366387IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.0E-28373529IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514506.434392413IPR001611Leucine-rich repeat
PROSITE profilePS514504.555415438IPR001611Leucine-rich repeat
SMARTSM00369260437460IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520581.09E-54460632IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.732463485IPR001611Leucine-rich repeat
SMARTSM00365180485511No hitNo description
SMARTSM00369100485509IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.11487509IPR001611Leucine-rich repeat
PROSITE profilePS514508.043487510IPR001611Leucine-rich repeat
PRINTSPR000193.1E-5488501No hitNo description
PROSITE profilePS514505.101512534IPR001611Leucine-rich repeat
SMARTSM00365330532558No hitNo description
Gene3DG3DSA:3.80.10.101.5E-49533632IPR032675Leucine-rich repeat domain, L domain-like
PfamPF005601.1534556IPR001611Leucine-rich repeat
PfamPF138554.0E-7557615IPR001611Leucine-rich repeat
PROSITE profilePS514505.694558579IPR001611Leucine-rich repeat
SMARTSM00369190580604IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.864604625IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.101.5E-49677768IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.09E-54677773IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369120695718IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.825697719IPR001611Leucine-rich repeat
PfamPF138551.1E-7697756IPR001611Leucine-rich repeat
PRINTSPR000193.1E-5719732No hitNo description
SMARTSM00365130719748No hitNo description
SMARTSM0036912719743IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.441721744IPR001611Leucine-rich repeat
PROSITE profilePS5006616.442890940IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-14890949IPR002100Transcription factor, MADS-box
CDDcd002661.63E-21891970No hitNo description
SuperFamilySSF554551.31E-17891984IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-6892912IPR002100Transcription factor, MADS-box
PfamPF003194.7E-15899940IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-6912927IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-6927948IPR002100Transcription factor, MADS-box
SuperFamilySSF561123.79E-1411461264IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.4E-511481180No hitNo description
PfamPF077143.4E-811861260IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.101.9E-811921263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1268 aa     Download sequence    Send to blast
MESWRNSSDC CYWDGIKCDA KTGEVIELNL SCSSLYGRFR SNSSLFRLQN LGFLDLSKND  60
LYGQIPSSIE KLFHLTTLDF SINQFSGQIT SSIGKLSHLK TLSLSHNQFS GQIPHSMGKL  120
SHLKYLFLYS NQFTGQIPSS IGKLSHLKHL SLDNNQFSGQ ILSSIGNLSH LEDLSLSHNN  180
LDGEIHSFLG SLNRLTILDV ASNKLSGNLP ISLLNLTNLK DLWLFNNQLT GTLPPNFSSL  240
SNLESFEAYD NTFVGSLPPS LFTIPSLNTI LLSNNQLGGT LEVGNLSSPS KLQWLYLGNN  300
NFRGPIPTSI SKLLNLESID LSHWNTQAPF DITIFSHLKS LERLFLSYLN TTTTIDLNAV  360
SSFSKSLHLL DLSGNHVLAT NKSSVSDPPS QLLSYLNLSD CGITEFPELV RIQQDMMTLD  420
ISNNKIKGQV PSWLWTLPNL NHVNLSNNTF IGFRRSAKHG LSSLVYLFGS NNNFTGNIPS  480
LICDFISLEI LDLSNNNISG SIPLCLENLK ANISVINLRQ NHLSGSLPGY VFESLRSFDV  540
GHNQLVGKLP RSFMNFSSLE VLNVESNRIK DTFPFWLSSL QNLKVLVLRS NAFHGPIHQA  600
SFSKLKIIDI SHNNFSGILP SDYFLNWSNM SSPGINEDQS KLNYMGDELG YYHDSMVLMN  660
KGIEMEMVRI LTIYTALDFS GNRLVGEIPK SIGLLKELHV LNLSNNAFTG HIPSSMGNLT  720
SLESLDISQN NLSGEIPQEL GKLSYLEYMN FSHNQFVGLV PGGTQFRTQP CSSFEPNSGL  780
FGPALGDACR DIHTPSSQQY ETPETEEEEE EVFSWLAAAI GFVPGVVHES FWPKQTQKQK  840
RHNSLERKAK TLKGALSFSC LLSFVTASSS QILTWQILVL FKYFFLGIWM GRKMVKIARI  900
TNEKTRITTY KKRKACLLKK ADEFSTLCGV NTCLIIYGPS RAGEERINGP ELWPDESKVR  960
EIIRKYRDTA SSSCTKTCSV QECLEKSKIK VRKEKYCPWD EKLDKCSLNE LYAAFVAVGN  1020
KIQEVANRNQ TFPDCSWSTN QLDLFGYNQQ CLEQQHQLFP LSTMEHNGFA FLPFFNQINS  1080
NTAEGSSFTN ISEPQTQAMF YGSYSNGQYA PMVHETAYME PMQWGLANDV LTSLLLPLRL  1140
HWFWYSSRAA IKGCKTSSGQ GILEFQTEIQ ILSRVRHRHL GDDPCLRVHG ERLKVGDLYK  1200
SSVRVALSPQ WLRRGNHSHR DVKSTNILLD ENTVAKVADF RLSKLAVRNQ DPCNTSSNVK  1260
GTFWLPRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A3e-791178237760LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009766.10.0receptor-like protein 12, partial
SwissprotQ9SRL20.0RLP34_ARATH; Receptor-like protein 34
TrEMBLA0A1I9LN750.0A0A1I9LN75_ARATH; Receptor like protein 34
TrEMBLA0A1I9LN770.0A0A1I9LN77_ARATH; Receptor like protein 34
STRINGXP_006396168.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-112M-type_MADS family protein
Publications ? help Back to Top
  1. Fritz-Laylin LK,Krishnamurthy N,Tör M,Sjölander KV,Jones JD
    Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 611-23
    [PMID:15955925]
  2. Wang G, et al.
    A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis.
    Plant Physiol., 2008. 147(2): p. 503-17
    [PMID:18434605]