PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752948
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 297aa    MW: 34187.3 Da    PI: 4.8912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752948genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.41.9e-5561351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp + k+    ++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s k
  676752948   6 LPPGFRFHPTDEELVAYYLDRKVNGRTIEL-EIIPEVDLYKCEPWDLPGTEKSflpgNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRAVES-K 103
                79****************************.99***************532334454788*************************************9.8 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                + ++g+kktLv+y+grap+g +t+Wvmheyrl
  676752948 104 KMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 135
                999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-583140IPR003441NAC domain
PROSITE profilePS5100554.7956162IPR003441NAC domain
PfamPF023654.6E-297135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RTIELEIIPE VDLYKCEPWD LPGTEKSFLP  60
GNDMEWYFYS TRDKKYPNGS RTNRATRAGY WKATGKDRAV ESKKMKMGMK KTLVYYRGRA  120
PHGLRTNWVM HEYRLTHLPS SSPSSSIKRK DEEMMVSSSV GKGEEEEEEK KWRKCDGNVE  180
ERMERESEEE ESLKVASAET SSSELTQGIL LDEANSSIFA LHFSSSLLDD HDQLFANYPQ  240
LPYHPPLQLQ DFPQLSMNEA EIMSIDNCKQ QDFQCRDSMN GTLDEIFSFS SSATLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-50213511140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762781e-136AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572074.11e-177NAC domain-containing protein 71-like
TrEMBLA0A3P6BE601e-175A0A3P6BE60_BRACM; Uncharacterized protein
TrEMBLM4CGK21e-175M4CGK2_BRARP; Uncharacterized protein
STRINGBra003335.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-138NAC domain containing protein 20