PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752782
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 423aa    MW: 48103.3 Da    PI: 7.6047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752782genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.8e-391872861100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l + ++++am++++++++ara+dP++G+++++++lq q++++++el+ + ++
  676752782 187 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLTPPQKDAAMHTIMFQSDARANDPIEGCYSIVRHLQYQIDCTRNELEIVLQQ 286
                7*********************************************************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.67186287IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-36187283IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MQTTKSHQSQ PLASHFSIYP LVEKLSKEIE SGNSNSTLSE LNSQFENCQQ ILNSVSVSIG  60
SKAMTVDGQK LKLDESNKLL EQRSYKLAYF LPKTYGRFGV RLGCKWKLNP KQKLLVKFLV  120
IACLSSLISL HSPAFPSHQE KTKEPNSPNL SKKKMPSGKP SSVFSLHPKP TPLKPSSSTS  180
NNSTNQACAA CKYQRRKCAP DCLLAPYFPH DRHRQFLNAH KLFGVSNITK IIKDLTPPQK  240
DAAMHTIMFQ SDARANDPIE GCYSIVRHLQ YQIDCTRNEL EIVLQQLAVF RDRAHNQHHH  300
HHQETHIQMQ EPEDLSSFSS SCDLNNNSIP YNYPLHHVEE PTQQQQQQYC SPGNFNGLQE  360
DMWCLQLQDS STTVNMKGGF IDECEDVKPV EEVSSERHEF EHHDGFVEER KLDLPSTQFI  420
ISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2418828712111LOB family transfactor Ramosa2.1
5ly0_B1e-2418828712111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752782
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298101.10.0LOB domain-containing protein 22
RefseqXP_023642605.10.0LOB domain-containing protein 22
SwissprotQ9LRW11e-160LBD22_ARATH; LOB domain-containing protein 22
TrEMBLR0HMS10.0R0HMS1_9BRAS; Uncharacterized protein
STRINGCagra.0736s0021.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-135LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]