 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676752744 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
GRAS |
| Protein Properties |
Length: 505aa MW: 56496.8 Da PI: 5.0891 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676752744 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 264 | 5e-81 | 145 | 505 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
++lL cA a+++++ +++q++L+ lselas+ gd+++Rlaa+ + AL++++++ s+++++l+ +++ ++ + l f+evsP++ + + +aN a
676752744 145 EQLLNPCALAITARNSSRVQHYLCVLSELASSCGDANHRLAAFGLCALQNHISS--SSVSSSLNFASAE---VKMFQKTLLKFYEVSPWFALPNNMANAA 239
689**************************************************9..8888888888776...4444444555****************** PP
GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
Il+ +++e + +Hi+D+++s+G+QWp+Ll+aL +R+egpp ++RiT+v++ +++ ++g +L fA +l+++++++v+ +++
676752744 240 ILQILAQEprdkKDLHILDIGVSHGMQWPTLLEALCCRAEGPPlRVRITVVSDLTADipfaVGPPSYNYGFQLIGFAGSLNINLQISVI-------DKFQ 332
*******99888889************************99999*********9999999989999*********************96.......5668 PP
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellg 291
++++p+E+l+V+ +++l++l +s+++er+evLk+++sl+Pk vv++e++ d+ +s++F+++f+++ley+++++ds++ ++ +e+++ Er+l++
676752744 333 LIDTSPHETLIVCTQFRLYQLK---HSMPDERSEVLKALRSLKPKGVVLCENNGDCsSSGNFAAGFSRKLEYMWKFLDSTSYGF----KEENSEERKLME 425
89*******************8...88999999***********************9999********************9997....888888999999 PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
e+++v++ +g+ +e + W er+++aGF + +++e+a + ak+llrk++ +++ r+e+ + + l Wk++p+ ++S W+
676752744 426 GEAKKVLMSSGET----NEGKDVWYERMRRAGFVADAFGEDAIDGAKSLLRKHDsNWEIRMEDADTFAGLLWKGEPVSFCSLWK 505
9**********99....99***********************************888888888888888**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MSLEETEPPT ETLDNVLGWL EDSMSLTPLP GFNDSDLVHE FDGSQTWEWD QTQDPGYDLL 60
HSYSQDLIAY TDCEATNLEV VTGGPVINSD LPPVLQQPND QSKKRNRNGF IDPHQVKRSA 120
RSKKRANKSS EKSCKDGNKE ERWAEQLLNP CALAITARNS SRVQHYLCVL SELASSCGDA 180
NHRLAAFGLC ALQNHISSSS VSSSLNFASA EVKMFQKTLL KFYEVSPWFA LPNNMANAAI 240
LQILAQEPRD KKDLHILDIG VSHGMQWPTL LEALCCRAEG PPLRVRITVV SDLTADIPFA 300
VGPPSYNYGF QLIGFAGSLN INLQISVIDK FQLIDTSPHE TLIVCTQFRL YQLKHSMPDE 360
RSEVLKALRS LKPKGVVLCE NNGDCSSSGN FAAGFSRKLE YMWKFLDSTS YGFKEENSEE 420
RKLMEGEAKK VLMSSGETNE GKDVWYERMR RAGFVADAFG EDAIDGAKSL LRKHDSNWEI 480
RMEDADTFAG LLWKGEPVSF CSLWK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX242547 | 0.0 | JX242547.1 Sinapis alba isolate SaNSP1 nodulation signaling pathway 1-like protein gene, complete cds. |
