PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 461aa    MW: 50983.5 Da    PI: 5.4904
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752710genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.6e-31238292155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  676752710 238 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 292
                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.486235295IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-29236293IPR009057Homeodomain-like
SuperFamilySSF466891.56E-16237292IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-24238293IPR006447Myb domain, plants
PfamPF002496.7E-8240291IPR001005SANT/Myb domain
PfamPF143793.6E-22328375IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNSHRPVSTA QDQCNKGIRQ ACSSSMSPAH NFLHVQPETR KSPFIRSQSP DSPGQLWPKN  60
SSQGTFSRSS TFCTDLYLSS SSTSETQKHL GNSLPFLPDP SSAYSHSASG VESARSPSIF  120
SEDLGHPFDG DNSGSLVKDF FDLSGDACSD RGFHDVDCSN DSYCLSDQME LQFLSDELEL  180
AITDRAETPR LDEIYETPLA SSNPVTGLSP SQRCVAGAMS VDAVSSHPTP ESAAANHKPR  240
MRWTPELHES FLKSVDKLEG PEKATPKAVL KLMNVEGLTI YHVKSHLQKY RLAKYMPEKK  300
EEKKSVNSEE KKLALSNSEA DEKKRGAIQL TEALRMQMEV QKQLHEQLEV QRVLQLRIEE  360
HAKYLEKMLE EQRKTGRLIS SSSQTLLSPS DDSIPDSENM SKTEVSLPHP SSPAKNTASE  420
TEGTLPQPSS PAASETEGDK CESPQKRRKL ENNVESEDPE K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-24238295259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297672.10.0myb family transcription factor PHL6
RefseqXP_020886314.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M90.0D7L0M9_ARALL; Uncharacterized protein
TrEMBLR0HYE10.0R0HYE1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__1373__AT3G13040.10.0(Arabidopsis lyrata)
STRINGXP_006297672.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]