PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | G2-like | ||||||||
Protein Properties | Length: 461aa MW: 50983.5 Da PI: 5.4904 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.3 | 2.6e-31 | 238 | 292 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl 676752710 238 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 292 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.486 | 235 | 295 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 236 | 293 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-16 | 237 | 292 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 238 | 293 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-8 | 240 | 291 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.6E-22 | 328 | 375 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MNSHRPVSTA QDQCNKGIRQ ACSSSMSPAH NFLHVQPETR KSPFIRSQSP DSPGQLWPKN 60 SSQGTFSRSS TFCTDLYLSS SSTSETQKHL GNSLPFLPDP SSAYSHSASG VESARSPSIF 120 SEDLGHPFDG DNSGSLVKDF FDLSGDACSD RGFHDVDCSN DSYCLSDQME LQFLSDELEL 180 AITDRAETPR LDEIYETPLA SSNPVTGLSP SQRCVAGAMS VDAVSSHPTP ESAAANHKPR 240 MRWTPELHES FLKSVDKLEG PEKATPKAVL KLMNVEGLTI YHVKSHLQKY RLAKYMPEKK 300 EEKKSVNSEE KKLALSNSEA DEKKRGAIQL TEALRMQMEV QKQLHEQLEV QRVLQLRIEE 360 HAKYLEKMLE EQRKTGRLIS SSSQTLLSPS DDSIPDSENM SKTEVSLPHP SSPAKNTASE 420 TEGTLPQPSS PAASETEGDK CESPQKRRKL ENNVESEDPE K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-24 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752710 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050889 | 0.0 | AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds. | |||
GenBank | AY096674 | 0.0 | AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297672.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_020886314.1 | 0.0 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | D7L0M9 | 0.0 | D7L0M9_ARALL; Uncharacterized protein | ||||
TrEMBL | R0HYE1 | 0.0 | R0HYE1_9BRAS; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__1373__AT3G13040.1 | 0.0 | (Arabidopsis lyrata) | ||||
STRING | XP_006297672.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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