PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752474
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CAMTA
Protein Properties Length: 1889aa    MW: 212095 Da    PI: 7.1373
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752474genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11841.6e-57161332118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e ++rwl++ ei++iL+n++k+++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e n++fqrrcyw
  676752474  16 LSEaQHRWLRPAEICEILQNYQKFHIASESPSRPVSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEGNENFQRRCYW 115
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                +Le++l +iv+vhylevk
  676752474 116 MLEKDLMHIVFVHYLEVK 133
                ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.78612138IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-8415133IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-5018132IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.42E-14423509IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.105.0E-4424498IPR013783Immunoglobulin-like fold
PROSITE profilePS5029714.477606678IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-13607747IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.49E-13607671IPR020683Ankyrin repeat-containing domain
CDDcd002041.06E-8612678No hitNo description
PROSITE profilePS500888.603623655IPR002110Ankyrin repeat
SuperFamilySSF484031.49E-13701746IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525406.64E-8857908IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.34858880IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015860879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657860888IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0029881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322882906IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4884903IPR000048IQ motif, EF-hand binding site
SuperFamilySSF753043.4E-6910421417IPR023631Amidase signature domain
Gene3DG3DSA:3.90.1300.106.3E-6810431419IPR023631Amidase signature domain
PfamPF014251.6E-4710441416IPR023631Amidase signature domain
SuperFamilySSF484523.52E-2814481555IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5029321.99414481549IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500057.58214481481IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.104.7E-3414481555IPR011990Tetratricopeptide-like helical domain
SMARTSM000280.01214481481IPR019734Tetratricopeptide repeat
PROSITE profilePS500057.81814821515IPR019734Tetratricopeptide repeat
SMARTSM000287.5E-614821515IPR019734Tetratricopeptide repeat
PfamPF131810.01314831515IPR019734Tetratricopeptide repeat
PROSITE profilePS500059.85315161549IPR019734Tetratricopeptide repeat
SMARTSM000280.009815161549IPR019734Tetratricopeptide repeat
SuperFamilySSF534741.25E-4616331885IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.2E-4716341885IPR029058Alpha/Beta hydrolase fold
PfamPF005613.4E-1516391738IPR000073Alpha/beta hydrolase fold-1
PRINTSPR001115.4E-1216651680IPR000073Alpha/beta hydrolase fold-1
PRINTSPR001115.4E-1217091722IPR000073Alpha/beta hydrolase fold-1
PRINTSPR001115.4E-1217231736IPR000073Alpha/beta hydrolase fold-1
PRINTSPR001115.4E-1218301844IPR000073Alpha/beta hydrolase fold-1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1889 aa     Download sequence    Send to blast
MDVLPLYEFA DMEQLLSEAQ HRWLRPAEIC EILQNYQKFH IASESPSRPV SGSLFLFDRK  60
VLRYFRKDGH NWRKKKDGKT IKEAHEKLKV GSIDVLHCYY AHGEGNENFQ RRCYWMLEKD  120
LMHIVFVHYL EVKGSRTSIG MKENNSNSVS GTASVNIDST ASPTSTLSSL CEDADSVLAQ  180
GIVIKQVLSC EHLLNLNLEI AMFGHQLLAW ILFHRFVGTE SEKVIPENSV ENLVIRFDQP  240
CKNLLTQVQS SNTESKLVKE RTDRGGMLTA EHLIRPLQTQ LNWQIPVQDD LPLPKWPVDL  300
VPHCGMTDDT NLALFELSAQ DNFETFTSLL GSENQQSVGN SFQAPPSSME TEYIPVKKSL  360
LRHEDSLKKV DSFSRWASKE LGEMEDLQMQ SSRGDIAWTT VDCETAAAGP SLSPSLSEDQ  420
RFTIVDYWPK CAPTDAEVEV LVIGTFLLSP QEVTMYNWSC MFGEVEVPAE ILVDGVLCCH  480
APPHTAGQVP FYVTCSNRFA CSELREFDFL SGSSNKIDAA DIYGTYTKEA SLQLRFERLL  540
AHRASFHEHQ IFEDVGEKRR KISRIMLLIE EKEYLFPGIF ERDSTKQEPK ERLFREQFED  600
ELYIWLIHKV TEEGKGPNIL DEDGQGVLHF VAALGYDWAI KPILAAGVNI NFRDANGWSA  660
LHWAAFSGRF HTPMITSLTL LVGPRLHNKL TLFPVKFREE TVAVLVSLGA AAGVLTDPSP  720
EHPLGKTAAD LAYVNGHRGI SGFLAESSLT SYLEKLTMEA KENSSANSGG PKAVQTVSER  780
TAAPMSYGDV PETLSLKDSL TAVRNATQAA DRLHQVFRMQ SFQRKQLSGY DDEIGISNEL  840
AVSFAGSKTK NPGHSDVSVH SAAIHIQKKY RGWKKRKEFL LIRQRVVKIQ AHVRGHQVRK  900
QYKPIVWSVG LLEKIILRWR RKGTGLRGFK RNAIAKTVEP EPPVSSVLCP PIPQEDDYDF  960
LEKGRKQTEE RLHKALTRVK SMVQYPEARD QYRRLLTVVE GFRENEASSS SSINNRREED  1020
LVNFEDDDLI DIDSLLNDDT FMFDLKDYIT GFGSPQWKKT HEPAEKTAVV VTTLLKNGAT  1080
CVAKTIMDEM GFGITGENRH YGTPINPLMP SHVPGGCSSG SAVSVAAELV DFALGIDTTG  1140
GVRIPASFCG ILGFRPSQGT VSSIGVLPNS QSLETVGWFA RDPSVLCQVG HALLNLSAVT  1200
HKRQRSLIFA DDLFELSDIP KQKSVHVVRK AIENLSGYPA PKHMNVGQYV ASNVPSLAEF  1260
CEKSGKSQDS ASILKALSSV MLSVQRHEFK TNHEEWSQTC RSFLGPRFSN DVVTALKSRT  1320
ENIKSLYRVK TEMRATIQNL LKEDGILVIP TVADPPLKLN TKNKNAMNEF LDRNYALASI  1380
ASMSGCCQVT IPLGKHGDNP ICVSFLAYYG GDKFLLDTIL DVYASLQDQA DIASSLAPVA  1440
DSNGMEASDL MKEKGNAAYK GRQWNKAVSC YTEAIKLNGA NATYFCNRAA AYLELGRFQQ  1500
AEEDCTEAVL IDKKNVKAYL RRGTARESLI RYKEAAADFR HALVLEPQNK TAKNAEKRLR  1560
KLMITWSDVW VFSAHLLPNR VLYRITISHS FTASRDWLFR QSFANAGLRS VTTDLSHGNS  1620
IASTAMHCWI PKYPNRSKPN LLLVHGFGAN AMWQYGEHLR AFTGRFNVYV PDLLFFGLSS  1680
TSEPNRSESF QARCLMRLME AHGVHRMNIV GISYGGFVGY SLAAQFPEKV EKLVLCCAGV  1740
CLEEKDMEDG LFKVPNLDEA TDILIPQTPE KLKELIRFSF VKPIKGVPSF FLWDFIDVMC  1800
TEFVEEKRDL IKSILKDRRL SDLPRIKQKS LIIWGEEDQI FPLELGYRLK RHIGENAEMV  1860
VIKKAGHAVN LEKSKEFLKH LKSFLIDSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6hpg_A2e-64144515613119Outer envelope protein 64, mitochondrial
6hpg_B2e-64144515613119Outer envelope protein 64, mitochondrial
6hpg_C2e-64144515613119Outer envelope protein 64, mitochondrial
6hpg_D2e-64144515613119Outer envelope protein 64, mitochondrial
6hpg_E2e-64144515613119Outer envelope protein 64, mitochondrial
6hpg_F2e-64144515613119Outer envelope protein 64, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752474
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893130.0AC189313.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034N10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011817.10.0calmodulin-binding transcription activator 1 isoform X3
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLV4N5T00.0V4N5T0_EUTSA; Uncharacterized protein
STRINGXP_006399418.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.30.0ethylene induced calmodulin binding protein