PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676752356

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 282aa MW: 32386.7 Da PI: 9.6081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752356	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	93	142	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r +h ++Er+RR+++N+ ++ L++++P + +s++ + a+i e +++Y+k+ 676752356 93 QRLNHIAVERNRRRQMNHFLSILKSMMPLS---YSQRSDQASIIEGTINYLKN 142 699*************************...****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.52E-12	90	142	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.4E-11	90	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-16	91	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.684	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-10	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-9	98	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MMFQKEYPYG FSRMETSLSY EIVDYFQKVV GSPLNPFSSS ATLSCSIAQQ QSYSTENLSS 60 LQAIGGSGEE PPRKRRKRRR TRSEQKIEEK ENQRLNHIAV ERNRRRQMNH FLSILKSMMP 120 LSYSQRSDQA SIIEGTINYL KNQEQLLQSL QAQLIKTTKS NQSPNIFSDF FIFPQYSTAT 180 VTASSHHHHD QLEVVADVEV TMIERHANIK VLTKTQPKLL FKIINEFYSL GLSTLHLNFT 240 TSSDMSLFTF SVKVEADCQF TTTANEVANA VQEVVKRIHK QN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	79	KRRKRRR
2	75	79	RKRRR
3	75	80	RKRRRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752356

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070095	8e-96	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	8e-96	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675453.1	1e-136	transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-121	BH099_ARATH; Transcription factor bHLH99
TrEMBL	A0A0D2ZQ38	1e-135	A0A0D2ZQ38_BRAOL; Uncharacterized protein
STRING	Bo00615s100.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-107	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]