PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752354
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33066.6 Da    PI: 4.3604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752354genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1953106356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  676752354  53 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 106
                56689************************************************9 PP
2HD-ZIP_I/II130.18.5e-4252144193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L +e++e
    676752354  52 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLAEIQE 144
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1945110IPR009057Homeodomain-like
PROSITE profilePS5007117.70248108IPR001356Homeobox domain
SMARTSM003891.3E-1851112IPR001356Homeobox domain
CDDcd000866.73E-1953109No hitNo description
PfamPF000462.2E-1653106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2055115IPR009057Homeodomain-like
PRINTSPR000317.2E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000317.2E-688104IPR000047Helix-turn-helix motif
PfamPF021836.0E-18108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MISSDNQLSP RPSATGFLYP STGDYSPMFD GLEDGSLEDI GVGHASSTAA AEKKRRLSVE  60
QVKALEKNFE IDNKLEPERK VKLAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYGVLKSN  120
FDALKRSRDS LQRDNDSLLA EIQELRAKLD VDGTSGCNGN ALTEENGVVK AVETVAYQTV  180
MVNNDVVELS QRSSPPQPHI TTEAPASELA YEMFSIFPRA ESLREDPADS SDSSAVLNEE  240
YSPTAAEAAA ATAVEMSTMG CFSQYVKMEE HEDLFSGEEA CKLFADNEQW YCAGQWNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00587DAPTransfer from AT5G65310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752354
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532471e-144AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130506.10.0PREDICTED: homeobox-leucine zipper protein ATHB-5-like
RefseqXP_013678412.10.0homeobox-leucine zipper protein ATHB-5-like
SwissprotP466671e-155ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A078HKI10.0A0A078HKI1_BRANA; BnaAnng04800D protein
TrEMBLA0A3P6AX270.0A0A3P6AX27_BRACM; Uncharacterized protein
STRINGBra031866.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129861526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-157homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]