PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752338
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 317aa    MW: 35590.9 Da    PI: 5.8714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752338genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+ +++++G  +W++ ++  g++R++k+c++rw +yl
        676752338 14 KGPWLPEEDDKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.98.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++  G++ W+ Ia +++ gRt++++k++w+++l
        676752338  67 RGKFSPEEEETILNLHAVVGNK-WSMIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6961IPR017930Myb domain
SuperFamilySSF466891.64E-2911108IPR009057Homeodomain-like
SMARTSM007178.4E-141363IPR001005SANT/Myb domain
PfamPF002494.2E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241568IPR009057Homeodomain-like
CDDcd001674.45E-111661No hitNo description
PROSITE profilePS5129427.28262116IPR017930Myb domain
SMARTSM007177.9E-1666114IPR001005SANT/Myb domain
PfamPF002495.9E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2869117IPR009057Homeodomain-like
CDDcd001673.53E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRSPGSDET GLKKGPWLPE EDDKLISYIH KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEETILN LHAVVGNKWS MIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DDIFSSLSQL MSLSNLRGLV DLQQQVPFDD QALHSLQAEM AKLQLLNYLL  180
QAPPLPMSSS NSINHNDLNI LNLLNKGNTN TNNLDFGLLT SCLQDFNNNL PPLETVNENH  240
FSQENSPIWS HEPLSLNQTM LPSHEPSTLG LGDDLVRSVD GFGCNQASSS QDQEVAATGS  300
VDWPDHLFDD STFPYQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752338
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150611.11e-179PREDICTED: transcription factor MYB39
SwissprotQ9FJP21e-162MYB53_ARATH; Transcription factor MYB53
TrEMBLM4E6G41e-177M4E6G4_BRARP; Uncharacterized protein
STRINGBra024368.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-157myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]