PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676752298

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 375aa MW: 42457.5 Da PI: 7.1023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752298	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	255	299	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er R +ri + + L +llP+ + ++ iL + v+++k Lq 676752298 255 TTERERKQRIDDNIKALAKLLPHE----VEENNPELILNEIVDHVKLLQ 299 57*********************9....455666668888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-6	248	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-6	255	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MQQFPLFLVS DKLFRVFLCS RFMGFNSVFQ SLTELFPQID ARILTTVAMD HPTNADEAAA 60 VVISEVVPLF PQHFTPKLDH LPHCKVEPDM QTDDARLALS QWLHPSQLPR SYLALLNEEE 120 STPDVKPPLD YAVNKLLLTS ARGGFQTIHS PSKNAANKTA SSLVKPSIHV QTRTNNEQVS 180 RIIIYLHLSC QGSSSRVGRS TRKGPLPWSQ NYSQKLRSWK KRSINDDNRD SSHLHGQWKD 240 VPSKQSNKNQ CKAYTTERER KQRIDDNIKA LAKLLPHEVE ENNPELILNE IVDHVKLLQL 300 QMKELSLSRL GGEPTSHPMT LIEGFGHYIH HEEMMTKPLE EMMEDLLAND PDAAASLLES 360 KGLYLMPLSS VQGLC

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MQQFPLFLVS DKLFRVFLCS RFMGFNSVFQ SLTELFPQID ARILTTVAMD HPTNADEAAA  60
VVISEVVPLF PQHFTPKLDH LPHCKVEPDM QTDDARLALS QWLHPSQLPR SYLALLNEEE  120
STPDVKPPLD YAVNKLLLTS ARGGFQTIHS PSKNAANKTA SSLVKPSIHV QTRTNNEQVS  180
RIIIYLHLSC QGSSSRVGRS TRKGPLPWSQ NYSQKLRSWK KRSINDDNRD SSHLHGQWKD  240
VPSKQSNKNQ CKAYTTERER KQRIDDNIKA LAKLLPHEVE ENNPELILNE IVDHVKLLQL  300
QMKELSLSRL GGEPTSHPMT LIEGFGHYIH HEEMMTKPLE EMMEDLLAND PDAAASLLES  360
KGLYLMPLSS VQGLC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752298

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625672.1	1e-171	PREDICTED: uncharacterized protein LOC106331805 isoform X1
TrEMBL	A0A0D3BEW2	1e-170	A0A0D3BEW2_BRAOL; Uncharacterized protein
STRING	Bo3g100520.1	1e-170	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-10	LJRHL1-like 2