PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676752238

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 205aa MW: 23167.5 Da PI: 6.2457

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752238	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89	3.8e-28	112	170	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver+ ed +v++tYeg Hnhe 676752238 112 MDDGYKWRKYGKKTVKNNSNKRNYYKCSSEGCMVKKRVERDGEDAAYVITTYEGVHNHE 170 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-31	99	172	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-26	104	172	IPR003657	WRKY domain
PROSITE profile	PS50811	29.482	107	172	IPR003657	WRKY domain
SMART	SM00774	2.9E-32	112	171	IPR003657	WRKY domain
Pfam	PF03106	1.1E-22	113	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MNISQNPSPN FTFFSDESFI PFMDNFDFSN LMFDVDEGVK SGFIQEETSS PTSIVSSETF 60 TGESGGSGSA ITTLSKKEST FDCKKNGGSK DGETKEMGHR VAFRTKSKID VMDDGYKWRK 120 YGKKTVKNNS NKRNYYKCSS EGCMVKKRVE RDGEDAAYVI TTYEGVHNHE SPSHVYYNDM 180 VLSYDHDSWN QHSLLRSIQQ ISPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	102	173	7	78	Probable WRKY transcription factor 4
2lex_A	2e-24	102	173	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752238

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394110.1	1e-130	probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	1e-113	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	V4MJ41	1e-129	V4MJ41_EUTSA; Uncharacterized protein
STRING	XP_006394110.1	1e-130	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-103	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]