PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676752124

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 312aa MW: 36167.8 Da PI: 6.8112

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752124	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.6	2.5e-23	166	215	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e ++ yF++pi++AAkeL+++lT+LK++ R++GI+RWPhRk++s+ 676752124 166 KTLSREAIKPYFYMPITKAAKELNIGLTLLKKRSRELGISRWPHRKLTSI 215 899********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	151	235	IPR003035	RWP-RK domain
Pfam	PF02042	6.0E-20	167	215	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MADHKPLRSW SESGYYESFL GEENLFSLLD QSLSFDYNSF TDNPFKDIQT QAWFSSFQDI 60 INVNPISTRF WAGDNMFMSS VDLDHMFMAS VDLEAISTLS QDVLSGSWNE NINGEYNNHV 120 QPIRDEMSTT NSIGNPNMEM VLHESNNTTR ETKSLKRRDR EYGVIKTLSR EAIKPYFYMP 180 ITKAAKELNI GLTLLKKRSR ELGISRWPHR KLTSIQGIIS NIEDHLGKTE GELKRDKLRK 240 ALEILEMEKK MIEEDPDLEF GDNTKKLRQA CFKANYKRRR LLSSSISTTV RGRASLDQRQ 300 SGERDLTKYD LY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	280	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752124

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-33	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-33	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013650739.1	1e-139	protein RKD3-like
Swissprot	Q9FGD1	1e-107	RKD3_ARATH; Protein RKD3
TrEMBL	A0A397YSP6	1e-137	A0A397YSP6_BRACM; Uncharacterized protein
STRING	Bo7g064180.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-88	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]