PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752082
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 122aa    MW: 13985.9 Da    PI: 10.2379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752082genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182170255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  676752082 21 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 70
               59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-312179IPR001471AP2/ERF domain
SMARTSM003801.9E-372184IPR001471AP2/ERF domain
PROSITE profilePS5103222.7872178IPR001471AP2/ERF domain
CDDcd000182.08E-272280No hitNo description
SuperFamilySSF541715.82E-222279IPR016177DNA-binding domain
PRINTSPR003674.8E-92233IPR001471AP2/ERF domain
PfamPF008472.7E-122270IPR001471AP2/ERF domain
PRINTSPR003674.8E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MESGGVANVA VSGTTRKRER PYKGIRMRKW GKWVAEIREP NKRSRLWLGS YSTPEAAARA  60
YDTAVFYLRG PTARLNFPDL LTGEKFSEED MSAATIRKKA TEDQGKTCCI NTYYRHYILH  120
FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-162278663ATERF1
3gcc_A7e-162278663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2498142e-63DQ249814.1 Brassica rapa subsp. pekinensis cDREB mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393917.17e-65ethylene-responsive transcription factor ERF010
SwissprotQ9FH948e-63ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLV4KV142e-63V4KV14_EUTSA; Uncharacterized protein
STRINGXP_006393917.13e-64(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-65DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]