PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751916
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 208aa    MW: 23299.4 Da    PI: 7.7335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751916genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-133780654
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  676751916 37 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 80
               589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6433180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-163498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-103780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-123786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-173894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-53880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESDHSKSFS VGYCGGGGET TNKKKSKKLE GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK  60
ISKMDRTSIL GDAIDYMKEL LDKINKLQDE EQELGISNGS HHSKLFGDIK DLNTNEPMVR  120
NSPKFEVDRR DVDTRVDICC SPKPGLLLST VNTLETLGLE IEQCVISCFS DFSLQASCSE  180
AAQQRDFITS EDIKQALFRN AGYGGNCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12244KKKSKKLEGQPSKNLMAERRRRK
23946ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851340.0AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485684.11e-141PREDICTED: transcription factor bHLH93
SwissprotQ9LSL11e-132BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A397Z0F81e-136A0A397Z0F8_BRACM; Uncharacterized protein
TrEMBLA0A3P5YIV81e-136A0A3P5YIV8_BRACM; Uncharacterized protein
TrEMBLM4E6K01e-136M4E6K0_BRARP; Uncharacterized protein
STRINGBra024404.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-124beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]