PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751912
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 312aa    MW: 34723.3 Da    PI: 8.2822
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751912genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-393392261
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  676751912 33 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 92
               57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-342091IPR003851Zinc finger, Dof-type
PfamPF027013.9E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5533791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSHTSLHSP KPDHRISGTS HTKKPPSSSA SQDQQTLKCP RCNSSNTKFC YYNNYSLSQP  60
RHFCKSCRRY WTRGGALRNV PIGGGCRKTK KSIKPNTITP SSSSSQRFFS SIMEDSSKFF  120
PPPTTMDFQL AGLSLNKIND LQLLNNQEVL GLRPMEQVET TTPVDVGSGL SLMGFGDYNN  180
SNNNNHSQAT FTTAGATDGN LATSIETLSC LNQDLHWRLQ QQRMAMLFGN SKEESVVVER  240
PQPILYRNLE IVNSSPSPTK KGDNQTEWYF GNTNDNEGVI NNDNDNNNTG GSEQWNNGIQ  300
AWTDLNHYNA LP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543303.10.0dof zinc finger protein DOF5.7-like
SwissprotQ9LSL61e-180DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLA0A397Z0F60.0A0A397Z0F6_BRACM; Uncharacterized protein
STRINGBo3g097960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-167Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]