PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751828
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 429aa    MW: 48612.1 Da    PI: 8.2036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751828genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-1978129156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                s+y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  676751828  78 SQYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 129
                78********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-2278137IPR016177DNA-binding domain
CDDcd000181.88E-3278137No hitNo description
PfamPF008474.8E-1278128IPR001471AP2/ERF domain
SMARTSM003809.9E-3779142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3179137IPR001471AP2/ERF domain
PROSITE profilePS5103224.05279136IPR001471AP2/ERF domain
PRINTSPR003676.8E-118091IPR001471AP2/ERF domain
PRINTSPR003676.8E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MCGGAIISDY IAPSRSDRVT ADQLWSDQVK NTRAGKSSWR QDDVVDLTMD DLEGDFEWVG  60
SSQSMNREDG RKKKKKSSQY RGIRRRPWGR WAAEIRDPIK GVRVWLGTFN TAEDAARAYD  120
LEAKRIRGAK AKLNFPNESP TTSSRKRKAF SPQPQVKRRE EKREADDDQL GGLPVAASSV  180
PPSLDFLREE SNNEETILVD TKWLEDVIIG DEKKKQKGSY DGEGANVNAL LSDELLAFEN  240
QTECFFQMPF MEGRNCGSST SLSSLLDGVN KHPRPSGALS LLYMIDSICS MAFSFLIFLT  300
RQKHIQRKEL RTLCLLRMIR NGIQKPVNSV STQFREKELV MTLELVKNLD TETASGFDVS  360
IAELHLLQSD SLARFLCTRF SEHDKLLDRH LHIKSTLGLV SALRSCCLLE EWLQTRFNNY  420
SATNILTLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2276136263ATERF1
3gcc_A5e-2276136263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17186KKKKKSSQYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751828
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390669.11e-112ethylene-responsive transcription factor ERF073
SwissprotQ8H0T51e-75ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLV4JRP21e-111V4JRP2_EUTSA; Uncharacterized protein
STRINGXP_006390669.11e-112(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.25e-84ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]