PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751756
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 324aa    MW: 36230.3 Da    PI: 5.2847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751756genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15125176155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  676751756 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 176
                79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-16123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-13123180No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.109248324IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFHDLYFQQ EEDRDPVDTK NNIKLGQEQR QGFASINYNG  60
KGGDKSDDYN NNDQEDLQWP RNDLPYGSAV DTENQLQPLD VSTGGGRRKR RRTRSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASIVGGAIN YLKELEHHLQ  180
SIEPPVNTTA TEDAGAVTGD QSSTIAASSS GPFSDFFAFP QYSSRPSSSS VAEGMAEIEV  240
TMVESHASVK ILAKKRPKQL LKLVASIQSL RLTLLHLNVT TRDNSVLYSI SLKVEEGSQL  300
NTVEDIAAAV NQILRRIEEE SSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2107112RKRRRT
3125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428088.10.0PREDICTED: transcription factor bHLH96 isoform X1
RefseqXP_010428089.10.0PREDICTED: transcription factor bHLH96 isoform X2
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3D0260.0A0A0D3D026_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q0000.0A0A3N6Q000_BRACR; Uncharacterized protein
TrEMBLA0A3P6GFE10.0A0A3P6GFE1_BRAOL; Uncharacterized protein
STRINGXP_010428089.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]