PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676751678

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 285aa MW: 32747.9 Da PI: 5.4703

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676751678	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.1	4.9e-25	120	170	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl 676751678 120 SKALSMETISRYFYMPITQAAMELNVGLTLLKRRCRELGFRRWPHRKLMSL 170 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	110	190	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-20	123	170	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MADHKLNEEN TFSFLTHSPS LDDHSSLTFP SFEWEEEFLP LHNSFVSQAF PLPTPFLPLP 60 DLEPLSEDVL DSYSSASRNE TEQNRGEGDL ENNNKNRKIN REHSVRIISD ITTYTTFSAS 120 KALSMETISR YFYMPITQAA MELNVGLTLL KRRCRELGFR RWPHRKLMSL LTLISNVKEL 180 QSMDGGENAG KLKNALEMLE KEKRMIEEFP DLEFEDKTKR LRQACFKATH KRKKKRCLKS 240 DQSHISMPSW SSSGSVVSEG SVDEEESDEE VKYLLCGFTS EFSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676751678

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390420.1	1e-157	protein RKD2
Swissprot	Q9CA66	1e-128	RKD2_ARATH; Protein RKD2
TrEMBL	V4M983	1e-156	V4M983_EUTSA; Uncharacterized protein
STRING	XP_006390420.1	1e-156	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-102	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]