PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751398
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 965aa    MW: 110068 Da    PI: 7.2712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751398genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l+d+v+q+G+++W++Ia +++ gR++k+c++rw++ 
        676751398  4 RGHWRPAEDEKLKDLVEQYGPHNWNAIALKLP-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding57.92.3e-185699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r+++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
        676751398 56 RNPFTEEEEERLLAAHRIHGNR-WSIIARLFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.673150IPR017930Myb domain
SMARTSM007171.1E-15352IPR001005SANT/Myb domain
PfamPF002491.3E-16449IPR001005SANT/Myb domain
SuperFamilySSF466893.71E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26557IPR009057Homeodomain-like
CDDcd001676.11E-14748No hitNo description
PROSITE profilePS5129426.37951105IPR017930Myb domain
SMARTSM007171.9E-1655103IPR001005SANT/Myb domain
PfamPF002495.1E-155698IPR001005SANT/Myb domain
CDDcd001673.36E-75898No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2158103IPR009057Homeodomain-like
PfamPF041361.1E-42263396IPR007265Conserved oligomeric Golgi complex, subunit 3
SuperFamilySSF747883.66E-6316589IPR016159Cullin repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0007030Biological ProcessGolgi organization
GO:0009860Biological Processpollen tube growth
GO:0048193Biological ProcessGolgi vesicle transport
GO:0005801Cellular Componentcis-Golgi network
GO:0005829Cellular Componentcytosol
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLKDLVE QYGPHNWNAI ALKLPGRSGK SCRLRWFNQL DPRINRNPFT  60
EEEEERLLAA HRIHGNRWSI IARLFPGRTD NAVKNHWHVI MARRTRQTSK PRMLPSTNSS  120
SSLMATEQIM MASGDRKRIL GDVVSYPYQF SHINHLQFLK EFFTGKIALN TKANQSKKPI  180
EFYNFLQSAP LTEEQQAAIV SLSHAVAERP FPANLVHEHV LRPENGLSVS VEDTNLGDSG  240
AIEAVLVNTN QFYKWFTDLE SAMKSEVDET LDLFNELQLQ HQAVTTKTKT LHDACDRLLM  300
EKQKLMEFAE ALRSKLNYFD ELENISSNFY SPNMNVSNSN FLPLLKRLDE CISYIESNPQ  360
YAESSVYLLK FRQLQSRALG MIRTYILAVL KTAASQVQAA FRGTDGNKAS VSEGVEASVI  420
YVRFKAAASE LKPVLEEIES RSARKEYVQI LAECHRLYCE QRLSLVKGIV HQRVSDFSKK  480
EALPSLTRSG CAYLMQVCQM EYQLFTHFFP ASSEEVSSLA PLVDPLSTYL YDILRPKLIH  540
EANIDLLCEL VHILKVEVLG EQSARQSEPL AGLRPTLQRI LADVNERLTF RARTYIRDEV  600
RILPYQQMFG LFSYNFFTDL SLALASTSMI LISVYVEIIA NYIPSDEDLD YPAKLEGSHN  660
TTSDTNLGVQ DDESADVFKT WYPPLEKTLS CLSKLYRCLE PAVFTGLAQA RLLYHYELHI  720
ILSNMQQKAS KLIIKRSTTM DGQLFLIKHL LILREQIAPF DIEFSVTHKE LDFSHLLEHL  780
RRILRGQASL FDWSRSTSLA RTLSPRVLES QIDAKKELEK CLKTTCEEFI MSVTKLVVDP  840
MLSFVTKVTA IKVSLSTGTQ NQKVDSVMSK PLKEQAFATP DKVAELVQKV YAAIQQELLP  900
ILAKMKLYLQ NPSTRTILFK PIKTNIVEAH TQVESLLKAE YSAEEQANIN MISIQDLQTQ  960
LDNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-3111041104C-Myb DNA-Binding Domain
1msf_C1e-3111041104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397670.0AY139767.1 Arabidopsis thaliana At1g73430/T9L24_16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569627.10.0conserved oligomeric Golgi complex subunit 3-like
TrEMBLA0A397YRK80.0A0A397YRK8_BRACM; Uncharacterized protein
STRINGXP_006390558.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.11e-114myb domain protein 54